8 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arid4b	Translocase of outer mitochondrial membrane 20. (1323 aa)
	kmt5b	Lysine methyltransferase 5B. (836 aa)
	arid4a	AT rich interactive domain 4A (RBP1-like). (1355 aa)
	bend3	Uncharacterized protein. (817 aa)
	pwp1	PWP1 homolog, endonuclein. (493 aa)
	smyd5	SMYD family member 5. (415 aa)
	LOC106932447	SET domain-containing protein. (1834 aa)
	setd4	SET domain containing 4. (453 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106932447	smyd5	ENSPMEP00000033540	ENSPMEP00000019978	SET domain-containing protein.	SMYD family member 5.	0.581
arid4a	arid4b	ENSPMEP00000008819	ENSPMEP00000022284	AT rich interactive domain 4A (RBP1-like).	Translocase of outer mitochondrial membrane 20.	0.750
arid4a	smyd5	ENSPMEP00000008819	ENSPMEP00000019978	AT rich interactive domain 4A (RBP1-like).	SMYD family member 5.	0.404
arid4b	arid4a	ENSPMEP00000022284	ENSPMEP00000008819	Translocase of outer mitochondrial membrane 20.	AT rich interactive domain 4A (RBP1-like).	0.750
arid4b	smyd5	ENSPMEP00000022284	ENSPMEP00000019978	Translocase of outer mitochondrial membrane 20.	SMYD family member 5.	0.404
kmt5b	smyd5	ENSPMEP00000000550	ENSPMEP00000019978	Lysine methyltransferase 5B.	SMYD family member 5.	0.581
smyd5	LOC106932447	ENSPMEP00000019978	ENSPMEP00000033540	SMYD family member 5.	SET domain-containing protein.	0.581
smyd5	arid4a	ENSPMEP00000019978	ENSPMEP00000008819	SMYD family member 5.	AT rich interactive domain 4A (RBP1-like).	0.404
smyd5	arid4b	ENSPMEP00000019978	ENSPMEP00000022284	SMYD family member 5.	Translocase of outer mitochondrial membrane 20.	0.404
smyd5	kmt5b	ENSPMEP00000019978	ENSPMEP00000000550	SMYD family member 5.	Lysine methyltransferase 5B.	0.581