(9 nodes) SNARE complex assembly network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106903400	V-SNARE coiled-coil homology domain-containing protein. (121 aa)
	vamp2	Vesicle-associated membrane protein 2. (120 aa)
	vamp4	Vesicle-associated membrane protein 4. (141 aa)
	stxbp6	Syntaxin binding protein 6 (amisyn). (241 aa)
	ENSPMEP00000014116	Zgc:92912. (125 aa)
	uvrag	UV radiation resistance associated gene. (684 aa)
	ENSPMEP00000026158	Vesicle-associated membrane protein 1. (125 aa)
	vamp3	V-SNARE coiled-coil homology domain-containing protein. (102 aa)
	LOC106903399	Vesicle-associated membrane protein 8 (endobrevin). (122 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000014116	LOC106903399	ENSPMEP00000014116	ENSPMEP00000033290	Zgc:92912.	Vesicle-associated membrane protein 8 (endobrevin).	0.484
ENSPMEP00000014116	LOC106903400	ENSPMEP00000014116	ENSPMEP00000033306	Zgc:92912.	V-SNARE coiled-coil homology domain-containing protein.	0.515
ENSPMEP00000014116	vamp3	ENSPMEP00000014116	ENSPMEP00000031817	Zgc:92912.	V-SNARE coiled-coil homology domain-containing protein.	0.896
ENSPMEP00000014116	vamp4	ENSPMEP00000014116	ENSPMEP00000001675	Zgc:92912.	Vesicle-associated membrane protein 4.	0.843
ENSPMEP00000026158	LOC106903399	ENSPMEP00000026158	ENSPMEP00000033290	Vesicle-associated membrane protein 1.	Vesicle-associated membrane protein 8 (endobrevin).	0.484
ENSPMEP00000026158	LOC106903400	ENSPMEP00000026158	ENSPMEP00000033306	Vesicle-associated membrane protein 1.	V-SNARE coiled-coil homology domain-containing protein.	0.484
ENSPMEP00000026158	vamp2	ENSPMEP00000026158	ENSPMEP00000000418	Vesicle-associated membrane protein 1.	Vesicle-associated membrane protein 2.	0.899
ENSPMEP00000026158	vamp3	ENSPMEP00000026158	ENSPMEP00000031817	Vesicle-associated membrane protein 1.	V-SNARE coiled-coil homology domain-containing protein.	0.968
ENSPMEP00000026158	vamp4	ENSPMEP00000026158	ENSPMEP00000001675	Vesicle-associated membrane protein 1.	Vesicle-associated membrane protein 4.	0.843
LOC106903399	ENSPMEP00000014116	ENSPMEP00000033290	ENSPMEP00000014116	Vesicle-associated membrane protein 8 (endobrevin).	Zgc:92912.	0.484
LOC106903399	ENSPMEP00000026158	ENSPMEP00000033290	ENSPMEP00000026158	Vesicle-associated membrane protein 8 (endobrevin).	Vesicle-associated membrane protein 1.	0.484
LOC106903399	LOC106903400	ENSPMEP00000033290	ENSPMEP00000033306	Vesicle-associated membrane protein 8 (endobrevin).	V-SNARE coiled-coil homology domain-containing protein.	0.901
LOC106903399	vamp2	ENSPMEP00000033290	ENSPMEP00000000418	Vesicle-associated membrane protein 8 (endobrevin).	Vesicle-associated membrane protein 2.	0.499
LOC106903399	vamp3	ENSPMEP00000033290	ENSPMEP00000031817	Vesicle-associated membrane protein 8 (endobrevin).	V-SNARE coiled-coil homology domain-containing protein.	0.743
LOC106903399	vamp4	ENSPMEP00000033290	ENSPMEP00000001675	Vesicle-associated membrane protein 8 (endobrevin).	Vesicle-associated membrane protein 4.	0.695
LOC106903400	ENSPMEP00000014116	ENSPMEP00000033306	ENSPMEP00000014116	V-SNARE coiled-coil homology domain-containing protein.	Zgc:92912.	0.515
LOC106903400	ENSPMEP00000026158	ENSPMEP00000033306	ENSPMEP00000026158	V-SNARE coiled-coil homology domain-containing protein.	Vesicle-associated membrane protein 1.	0.484
LOC106903400	LOC106903399	ENSPMEP00000033306	ENSPMEP00000033290	V-SNARE coiled-coil homology domain-containing protein.	Vesicle-associated membrane protein 8 (endobrevin).	0.901
LOC106903400	vamp2	ENSPMEP00000033306	ENSPMEP00000000418	V-SNARE coiled-coil homology domain-containing protein.	Vesicle-associated membrane protein 2.	0.512
LOC106903400	vamp3	ENSPMEP00000033306	ENSPMEP00000031817	V-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.747