(8 nodes) Protein K11-linked deubiquitination network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	yod1	YOD1 deubiquitinase. (300 aa)
	usp30	Ubiquitin carboxyl-terminal hydrolase. (508 aa)
	otud7a	OTU deubiquitinase 7A. (956 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (824 aa)
	vcpip1	Valosin containing protein (p97)/p47 complex interacting protein 1. (1164 aa)
	otud7b	OTU deubiquitinase 7B. (913 aa)
	usp37	Ubiquitin carboxyl-terminal hydrolase. (952 aa)
	otud3	OTU deubiquitinase 3. (358 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
otud3	otud7a	ENSPMEP00000005194	ENSPMEP00000024057	OTU deubiquitinase 3.	OTU deubiquitinase 7A.	0.410
otud3	otud7b	ENSPMEP00000005194	ENSPMEP00000011784	OTU deubiquitinase 3.	OTU deubiquitinase 7B.	0.410
otud3	usp30	ENSPMEP00000005194	ENSPMEP00000018204	OTU deubiquitinase 3.	Ubiquitin carboxyl-terminal hydrolase.	0.443
otud7a	otud3	ENSPMEP00000024057	ENSPMEP00000005194	OTU deubiquitinase 7A.	OTU deubiquitinase 3.	0.410
otud7b	otud3	ENSPMEP00000011784	ENSPMEP00000005194	OTU deubiquitinase 7B.	OTU deubiquitinase 3.	0.410
otud7b	tnfaip3	ENSPMEP00000011784	ENSPMEP00000025005	OTU deubiquitinase 7B.	Tumor necrosis factor, alpha-induced protein 3.	0.568
otud7b	vcpip1	ENSPMEP00000011784	ENSPMEP00000029478	OTU deubiquitinase 7B.	Valosin containing protein (p97)/p47 complex interacting protein 1.	0.454
tnfaip3	otud7b	ENSPMEP00000025005	ENSPMEP00000011784	Tumor necrosis factor, alpha-induced protein 3.	OTU deubiquitinase 7B.	0.568
usp30	otud3	ENSPMEP00000018204	ENSPMEP00000005194	Ubiquitin carboxyl-terminal hydrolase.	OTU deubiquitinase 3.	0.443
vcpip1	otud7b	ENSPMEP00000029478	ENSPMEP00000011784	Valosin containing protein (p97)/p47 complex interacting protein 1.	OTU deubiquitinase 7B.	0.454