(5 nodes) Nuclear pore central transport channel network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nxt2	Nuclear transport factor 2-like export factor 2. (143 aa)
	nutf2	Nuclear transport factor 2. (127 aa)
	NUP54	Nucleoporin 54. (621 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (296 aa)
	NUP62	Nucleoporin 62. (550 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NUP54	NUP62	ENSPMEP00000002596	ENSPMEP00000020220	Nucleoporin 54.	Nucleoporin 62.	0.999
NUP54	nup35	ENSPMEP00000002596	ENSPMEP00000026686	Nucleoporin 54.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.978
NUP54	nutf2	ENSPMEP00000002596	ENSPMEP00000004213	Nucleoporin 54.	Nuclear transport factor 2.	0.644
NUP54	nxt2	ENSPMEP00000002596	ENSPMEP00000006818	Nucleoporin 54.	Nuclear transport factor 2-like export factor 2.	0.723
NUP62	NUP54	ENSPMEP00000020220	ENSPMEP00000002596	Nucleoporin 62.	Nucleoporin 54.	0.999
NUP62	nup35	ENSPMEP00000020220	ENSPMEP00000026686	Nucleoporin 62.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.958
NUP62	nutf2	ENSPMEP00000020220	ENSPMEP00000004213	Nucleoporin 62.	Nuclear transport factor 2.	0.765
NUP62	nxt2	ENSPMEP00000020220	ENSPMEP00000006818	Nucleoporin 62.	Nuclear transport factor 2-like export factor 2.	0.791
nup35	NUP54	ENSPMEP00000026686	ENSPMEP00000002596	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	Nucleoporin 54.	0.978
nup35	NUP62	ENSPMEP00000026686	ENSPMEP00000020220	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	Nucleoporin 62.	0.958
nup35	nxt2	ENSPMEP00000026686	ENSPMEP00000006818	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	Nuclear transport factor 2-like export factor 2.	0.706
nutf2	NUP54	ENSPMEP00000004213	ENSPMEP00000002596	Nuclear transport factor 2.	Nucleoporin 54.	0.644
nutf2	NUP62	ENSPMEP00000004213	ENSPMEP00000020220	Nuclear transport factor 2.	Nucleoporin 62.	0.765
nutf2	nxt2	ENSPMEP00000004213	ENSPMEP00000006818	Nuclear transport factor 2.	Nuclear transport factor 2-like export factor 2.	0.513
nxt2	NUP54	ENSPMEP00000006818	ENSPMEP00000002596	Nuclear transport factor 2-like export factor 2.	Nucleoporin 54.	0.723
nxt2	NUP62	ENSPMEP00000006818	ENSPMEP00000020220	Nuclear transport factor 2-like export factor 2.	Nucleoporin 62.	0.791
nxt2	nup35	ENSPMEP00000006818	ENSPMEP00000026686	Nuclear transport factor 2-like export factor 2.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.706
nxt2	nutf2	ENSPMEP00000006818	ENSPMEP00000004213	Nuclear transport factor 2-like export factor 2.	Nuclear transport factor 2.	0.513