11 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup98	Nucleoporin 98. (1818 aa)
	LOC106917807	Translocated promoter region a, nuclear basket protein. (2082 aa)
	mcm3ap	Minichromosome maintenance complex component 3 associated protein. (2223 aa)
	LOC106926029	Uncharacterized protein. (177 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (296 aa)
	LOC106929963	Translocated promoter region b, nuclear basket protein. (1688 aa)
	mad1l1	Mitotic arrest deficient 1 like 1. (719 aa)
	ranbp2	RAN binding protein 2. (3061 aa)
	LOC106926030	Uncharacterized protein. (166 aa)
	nup153	Nucleoporin 153. (1518 aa)
	mad2l1	MAD2 mitotic arrest deficient-like 1 (yeast). (236 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106917807	LOC106926029	ENSPMEP00000023757	ENSPMEP00000030720	Translocated promoter region a, nuclear basket protein.	Uncharacterized protein.	0.489
LOC106917807	LOC106926030	ENSPMEP00000023757	ENSPMEP00000014876	Translocated promoter region a, nuclear basket protein.	Uncharacterized protein.	0.489
LOC106917807	LOC106929963	ENSPMEP00000023757	ENSPMEP00000028805	Translocated promoter region a, nuclear basket protein.	Translocated promoter region b, nuclear basket protein.	0.895
LOC106917807	mad1l1	ENSPMEP00000023757	ENSPMEP00000004026	Translocated promoter region a, nuclear basket protein.	Mitotic arrest deficient 1 like 1.	0.705
LOC106917807	mad2l1	ENSPMEP00000023757	ENSPMEP00000021630	Translocated promoter region a, nuclear basket protein.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.484
LOC106917807	mcm3ap	ENSPMEP00000023757	ENSPMEP00000026302	Translocated promoter region a, nuclear basket protein.	Minichromosome maintenance complex component 3 associated protein.	0.642
LOC106917807	nup153	ENSPMEP00000023757	ENSPMEP00000018723	Translocated promoter region a, nuclear basket protein.	Nucleoporin 153.	0.941
LOC106917807	nup35	ENSPMEP00000023757	ENSPMEP00000026686	Translocated promoter region a, nuclear basket protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.729
LOC106917807	nup98	ENSPMEP00000023757	ENSPMEP00000021893	Translocated promoter region a, nuclear basket protein.	Nucleoporin 98.	0.935
LOC106917807	ranbp2	ENSPMEP00000023757	ENSPMEP00000004336	Translocated promoter region a, nuclear basket protein.	RAN binding protein 2.	0.996
LOC106926029	LOC106917807	ENSPMEP00000030720	ENSPMEP00000023757	Uncharacterized protein.	Translocated promoter region a, nuclear basket protein.	0.489
LOC106926029	LOC106929963	ENSPMEP00000030720	ENSPMEP00000028805	Uncharacterized protein.	Translocated promoter region b, nuclear basket protein.	0.489
LOC106926029	mcm3ap	ENSPMEP00000030720	ENSPMEP00000026302	Uncharacterized protein.	Minichromosome maintenance complex component 3 associated protein.	0.947
LOC106926029	nup153	ENSPMEP00000030720	ENSPMEP00000018723	Uncharacterized protein.	Nucleoporin 153.	0.644
LOC106926030	LOC106917807	ENSPMEP00000014876	ENSPMEP00000023757	Uncharacterized protein.	Translocated promoter region a, nuclear basket protein.	0.489
LOC106926030	LOC106929963	ENSPMEP00000014876	ENSPMEP00000028805	Uncharacterized protein.	Translocated promoter region b, nuclear basket protein.	0.489
LOC106926030	mcm3ap	ENSPMEP00000014876	ENSPMEP00000026302	Uncharacterized protein.	Minichromosome maintenance complex component 3 associated protein.	0.947
LOC106926030	nup153	ENSPMEP00000014876	ENSPMEP00000018723	Uncharacterized protein.	Nucleoporin 153.	0.644
LOC106929963	LOC106917807	ENSPMEP00000028805	ENSPMEP00000023757	Translocated promoter region b, nuclear basket protein.	Translocated promoter region a, nuclear basket protein.	0.895
LOC106929963	LOC106926029	ENSPMEP00000028805	ENSPMEP00000030720	Translocated promoter region b, nuclear basket protein.	Uncharacterized protein.	0.489