32 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
	prpf8	Pre-mRNA processing factor 8. (2358 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (1841 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	ENSPMEP00000000741	WD_REPEATS_REGION domain-containing protein. (121 aa)
	usp39	Ubiquitin specific peptidase 39. (512 aa)
	ENSPMEP00000002318	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (339 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (113 aa)
	LOC106931424	Zgc:153119. (295 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (772 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (691 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (508 aa)
	ENSPMEP00000032955	SEC63 domain-containing protein. (153 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	lsm3	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000000741	ENSPMEP00000002318	ENSPMEP00000000741	ENSPMEP00000002318	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein polypeptide F.	0.953
ENSPMEP00000000741	ENSPMEP00000032955	ENSPMEP00000000741	ENSPMEP00000032955	WD_REPEATS_REGION domain-containing protein.	SEC63 domain-containing protein.	0.917
ENSPMEP00000000741	LOC106931424	ENSPMEP00000000741	ENSPMEP00000010454	WD_REPEATS_REGION domain-containing protein.	Zgc:153119.	0.885
ENSPMEP00000000741	SART1	ENSPMEP00000000741	ENSPMEP00000011540	WD_REPEATS_REGION domain-containing protein.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.954
ENSPMEP00000000741	SNRPN	ENSPMEP00000000741	ENSPMEP00000017808	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.869
ENSPMEP00000000741	ddx23	ENSPMEP00000000741	ENSPMEP00000029562	WD_REPEATS_REGION domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.931
ENSPMEP00000000741	eftud2	ENSPMEP00000000741	ENSPMEP00000003855	WD_REPEATS_REGION domain-containing protein.	Elongation factor Tu GTP binding domain containing 2.	0.964
ENSPMEP00000000741	lsm2	ENSPMEP00000000741	ENSPMEP00000016848	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.929
ENSPMEP00000000741	lsm3	ENSPMEP00000000741	ENSPMEP00000033513	WD_REPEATS_REGION domain-containing protein.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.895
ENSPMEP00000000741	lsm4	ENSPMEP00000000741	ENSPMEP00000030150	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.923
ENSPMEP00000000741	lsm5	ENSPMEP00000000741	ENSPMEP00000019255	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.925
ENSPMEP00000000741	lsm6	ENSPMEP00000000741	ENSPMEP00000002919	WD_REPEATS_REGION domain-containing protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.927
ENSPMEP00000000741	lsm7	ENSPMEP00000000741	ENSPMEP00000009591	WD_REPEATS_REGION domain-containing protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.947
ENSPMEP00000000741	lsm8	ENSPMEP00000000741	ENSPMEP00000033804	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.943
ENSPMEP00000000741	prpf3	ENSPMEP00000000741	ENSPMEP00000034356	WD_REPEATS_REGION domain-containing protein.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.994
ENSPMEP00000000741	prpf31	ENSPMEP00000000741	ENSPMEP00000030904	WD_REPEATS_REGION domain-containing protein.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.978
ENSPMEP00000000741	prpf6	ENSPMEP00000000741	ENSPMEP00000008204	WD_REPEATS_REGION domain-containing protein.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.967
ENSPMEP00000000741	prpf8	ENSPMEP00000000741	ENSPMEP00000022812	WD_REPEATS_REGION domain-containing protein.	Pre-mRNA processing factor 8.	0.964
ENSPMEP00000000741	snrnp200	ENSPMEP00000000741	ENSPMEP00000018150	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein 200 (U5).	0.917
ENSPMEP00000000741	snrnp40	ENSPMEP00000000741	ENSPMEP00000012401	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein 40 (U5).	0.934