15 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ankrd13a	Ankyrin repeat domain 13A. (597 aa)
	rabgef1	RAB guanine nucleotide exchange factor (GEF) 1. (503 aa)
	unc119	Unc-119 lipid binding chaperone. (141 aa)
	lrpap1	Low density lipoprotein receptor-related protein associated protein 1. (340 aa)
	LOC106920844	Ankyrin repeat domain 13 family, member D. (634 aa)
	LOC106923486	Sialidase 3 (membrane sialidase), tandem duplicate 1. (410 aa)
	atxn2	Ataxin 2. (1033 aa)
	lrrtm1	Leucine rich repeat transmembrane neuronal 1. (524 aa)
	pcsk9	Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family. (607 aa)
	LOC106923937	VPS9 domain-containing protein. (820 aa)
	ankrd13b	Ankyrin repeat domain 13B. (693 aa)
	ENSPMEP00000022377	Leucine rich repeat transmembrane neuronal 2. (525 aa)
	LOC106917741	RAB guanine nucleotide exchange factor (GEF) 1, like. (509 aa)
	LOC106907013	GMP_PDE_delta domain-containing protein. (250 aa)
	wdr54	WD repeat domain 54. (336 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106917741	LOC106923937	ENSPMEP00000025561	ENSPMEP00000016455	RAB guanine nucleotide exchange factor (GEF) 1, like.	VPS9 domain-containing protein.	0.694
LOC106917741	rabgef1	ENSPMEP00000025561	ENSPMEP00000003015	RAB guanine nucleotide exchange factor (GEF) 1, like.	RAB guanine nucleotide exchange factor (GEF) 1.	0.651
LOC106923937	LOC106917741	ENSPMEP00000016455	ENSPMEP00000025561	VPS9 domain-containing protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.694
LOC106923937	rabgef1	ENSPMEP00000016455	ENSPMEP00000003015	VPS9 domain-containing protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.694
rabgef1	LOC106917741	ENSPMEP00000003015	ENSPMEP00000025561	RAB guanine nucleotide exchange factor (GEF) 1.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.651
rabgef1	LOC106923937	ENSPMEP00000003015	ENSPMEP00000016455	RAB guanine nucleotide exchange factor (GEF) 1.	VPS9 domain-containing protein.	0.694