(35 nodes) Calcium-dependent protein binding network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TNNC1	Troponin C1, slow skeletal and cardiac type. (163 aa)
	wfs1	Wolfram syndrome 1b (wolframin). (971 aa)
	LOC106928305	Annexin. (316 aa)
	ENSPMEP00000002021	EF-hand domain-containing protein. (92 aa)
	chp1	Calcineurin-like EF-hand protein 1. (195 aa)
	vps37b	Zgc:114173. (284 aa)
	LOC106906803	Uncharacterized protein. (161 aa)
	LOC106920378	Protein S100; Belongs to the S-100 family. (125 aa)
	LOC106925032	Troponin C type 1b (slow). (167 aa)
	s100pbp	Uncharacterized protein. (477 aa)
	s100b	S100 calcium binding protein, beta (neural); Belongs to the S-100 family. (94 aa)
	LOC106906614	Stathmin; Belongs to the stathmin family. (180 aa)
	LOC106916262	Protein S100; Belongs to the S-100 family. (87 aa)
	LOC106928658	Wolfram syndrome 1a (wolframin). (855 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (179 aa)
	nsmf	NMDA receptor synaptonuclear signaling and neuronal migration factor b. (474 aa)
	ENSPMEP00000016183	Protein S100; Belongs to the S-100 family. (88 aa)
	LOC106917343	Zgc:123278. (186 aa)
	LOC106917949	Annexin. (495 aa)
	alg2	ALG2 alpha-1,3/1,6-mannosyltransferase. (419 aa)
	LOC106918314	NMDA receptor synaptonuclear signaling and neuronal migration factor a. (493 aa)
	LOC106905121	Si:rp71-17i16.4. (161 aa)
	lrrc45	Leucine rich repeat containing 45. (674 aa)
	SYT8	Uncharacterized protein. (444 aa)
	s100z	Protein S100; Belongs to the S-100 family. (98 aa)
	LOC106920784	Annexin. (316 aa)
	LOC106918194	EF-hand domain-containing protein. (86 aa)
	LOC106918185	Protein S100; Belongs to the S-100 family. (97 aa)
	anxa6	Annexin. (665 aa)
	pdcd6	Programmed cell death 6. (188 aa)
	pdcd6ip	Programmed cell death 6 interacting protein. (885 aa)
	LOC106907832	VPS37C subunit of ESCRT-I. (360 aa)
	LOC106922624	EF-hand domain-containing protein. (110 aa)
	LOC106930516	Annexin. (499 aa)
	tsg101	Tumor susceptibility 101a. (390 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106905121	LOC106906803	ENSPMEP00000025689	ENSPMEP00000004861	Si:rp71-17i16.4.	Uncharacterized protein.	0.913
LOC106905121	LOC106925032	ENSPMEP00000025689	ENSPMEP00000006117	Si:rp71-17i16.4.	Troponin C type 1b (slow).	0.913
LOC106905121	TNNC1	ENSPMEP00000025689	ENSPMEP00000003129	Si:rp71-17i16.4.	Troponin C1, slow skeletal and cardiac type.	0.904
LOC106906803	LOC106905121	ENSPMEP00000004861	ENSPMEP00000025689	Uncharacterized protein.	Si:rp71-17i16.4.	0.913
LOC106906803	TNNC1	ENSPMEP00000004861	ENSPMEP00000003129	Uncharacterized protein.	Troponin C1, slow skeletal and cardiac type.	0.899
LOC106907832	LOC106917343	ENSPMEP00000030963	ENSPMEP00000018015	VPS37C subunit of ESCRT-I.	Zgc:123278.	0.929
LOC106907832	pdcd6ip	ENSPMEP00000030963	ENSPMEP00000028972	VPS37C subunit of ESCRT-I.	Programmed cell death 6 interacting protein.	0.435
LOC106907832	tsg101	ENSPMEP00000030963	ENSPMEP00000032797	VPS37C subunit of ESCRT-I.	Tumor susceptibility 101a.	0.929
LOC106907832	vps37b	ENSPMEP00000030963	ENSPMEP00000003760	VPS37C subunit of ESCRT-I.	Zgc:114173.	0.842
LOC106917343	LOC106907832	ENSPMEP00000018015	ENSPMEP00000030963	Zgc:123278.	VPS37C subunit of ESCRT-I.	0.929
LOC106917343	pdcd6	ENSPMEP00000018015	ENSPMEP00000028209	Zgc:123278.	Programmed cell death 6.	0.528
LOC106917343	pdcd6ip	ENSPMEP00000018015	ENSPMEP00000028972	Zgc:123278.	Programmed cell death 6 interacting protein.	0.923
LOC106917343	vps37b	ENSPMEP00000018015	ENSPMEP00000003760	Zgc:123278.	Zgc:114173.	0.979
LOC106917949	LOC106918185	ENSPMEP00000018725	ENSPMEP00000027584	Annexin.	Protein S100; Belongs to the S-100 family.	0.630
LOC106917949	s100z	ENSPMEP00000018725	ENSPMEP00000027239	Annexin.	Protein S100; Belongs to the S-100 family.	0.436
LOC106917949	tsg101	ENSPMEP00000018725	ENSPMEP00000032797	Annexin.	Tumor susceptibility 101a.	0.446
LOC106918185	LOC106917949	ENSPMEP00000027584	ENSPMEP00000018725	Protein S100; Belongs to the S-100 family.	Annexin.	0.630
LOC106918185	LOC106920784	ENSPMEP00000027584	ENSPMEP00000027406	Protein S100; Belongs to the S-100 family.	Annexin.	0.630
LOC106918185	LOC106928305	ENSPMEP00000027584	ENSPMEP00000000347	Protein S100; Belongs to the S-100 family.	Annexin.	0.630
LOC106918185	LOC106930516	ENSPMEP00000027584	ENSPMEP00000032591	Protein S100; Belongs to the S-100 family.	Annexin.	0.630