(21 nodes) Regulation of protein deubiquitination network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubxn1	UBX domain protein 1. (303 aa)
	LOC106926982	Uncharacterized protein. (355 aa)
	LOC106931655	Deoxyribonuclease 1 like 4, tandem duplicate 1. (323 aa)
	LOC106931658	Deoxyribonuclease; Belongs to the DNase I family. (301 aa)
	otud4	OTU domain-containing protein. (918 aa)
	LOC106916350	WD repeat domain 20b. (624 aa)
	ENSPMEP00000005626	Uncharacterized protein. (94 aa)
	LOC106931653	Endo/exonuclease/phosphatase domain-containing protein. (402 aa)
	sart3	Spliceosome associated factor 3, U4/U6 recycling protein. (945 aa)
	LOC106909247	Itchy E3 ubiquitin protein ligase b. (331 aa)
	LOC106905577	Uncharacterized protein. (320 aa)
	LOC106912263	NOP53 ribosome biogenesis factor. (322 aa)
	itch	E3 ubiquitin-protein ligase. (869 aa)
	LOC106923336	Deoxyribonuclease 1 like 4, tandem duplicate 2. (320 aa)
	tank	TRAF family member-associated NFKB activator. (336 aa)
	LOC106922814	DM1 locus, WD repeat containing. (685 aa)
	LOC106906194	Zinc finger CCCH-type containing 12A. (627 aa)
	tnip1	TNFAIP3 interacting protein 1. (657 aa)
	LOC106910308	Si:dkey-206d17.12. (556 aa)
	wdr20	WD repeat domain 20a. (608 aa)
	nop53	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (466 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000005626	itch	ENSPMEP00000005626	ENSPMEP00000031496	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.898
LOC106906194	tank	ENSPMEP00000011586	ENSPMEP00000029831	Zinc finger CCCH-type containing 12A.	TRAF family member-associated NFKB activator.	0.606
LOC106909247	itch	ENSPMEP00000017318	ENSPMEP00000031496	Itchy E3 ubiquitin protein ligase b.	E3 ubiquitin-protein ligase.	0.898
LOC106910308	tank	ENSPMEP00000009332	ENSPMEP00000029831	Si:dkey-206d17.12.	TRAF family member-associated NFKB activator.	0.598
itch	ENSPMEP00000005626	ENSPMEP00000031496	ENSPMEP00000005626	E3 ubiquitin-protein ligase.	Uncharacterized protein.	0.898
itch	LOC106909247	ENSPMEP00000031496	ENSPMEP00000017318	E3 ubiquitin-protein ligase.	Itchy E3 ubiquitin protein ligase b.	0.898
tank	LOC106906194	ENSPMEP00000029831	ENSPMEP00000011586	TRAF family member-associated NFKB activator.	Zinc finger CCCH-type containing 12A.	0.606
tank	LOC106910308	ENSPMEP00000029831	ENSPMEP00000009332	TRAF family member-associated NFKB activator.	Si:dkey-206d17.12.	0.598