10 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vegfa	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family. (214 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1418 aa)
	mst1r	Macrophage stimulating 1 receptor b. (1374 aa)
	LOC106928125	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family. (210 aa)
	lgmn	Legumain. (437 aa)
	LOC106904570	Heat shock protein, alpha-crystallin-related, b15; Belongs to the small heat shock protein (HSP20) family. (199 aa)
	hspb1	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family. (200 aa)
	LOC106916334	Macrophage stimulating 1 receptor a. (1374 aa)
	ENSPMEP00000018794	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (200 aa)
	fgf16	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (201 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000018794	LOC106916334	ENSPMEP00000018794	ENSPMEP00000025677	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Macrophage stimulating 1 receptor a.	0.612
ENSPMEP00000018794	fgf16	ENSPMEP00000018794	ENSPMEP00000013963	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.506
ENSPMEP00000018794	met	ENSPMEP00000018794	ENSPMEP00000013002	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	MET proto-oncogene, receptor tyrosine kinase.	0.902
ENSPMEP00000018794	mst1r	ENSPMEP00000018794	ENSPMEP00000012956	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Macrophage stimulating 1 receptor b.	0.612
LOC106904570	hspb1	ENSPMEP00000025779	ENSPMEP00000027520	Heat shock protein, alpha-crystallin-related, b15; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family.	0.959
LOC106916334	ENSPMEP00000018794	ENSPMEP00000025677	ENSPMEP00000018794	Macrophage stimulating 1 receptor a.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.612
LOC106916334	LOC106928125	ENSPMEP00000025677	ENSPMEP00000004401	Macrophage stimulating 1 receptor a.	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	0.612
LOC106916334	fgf16	ENSPMEP00000025677	ENSPMEP00000013963	Macrophage stimulating 1 receptor a.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.597
LOC106916334	met	ENSPMEP00000025677	ENSPMEP00000013002	Macrophage stimulating 1 receptor a.	MET proto-oncogene, receptor tyrosine kinase.	0.757
LOC106916334	mst1r	ENSPMEP00000025677	ENSPMEP00000012956	Macrophage stimulating 1 receptor a.	Macrophage stimulating 1 receptor b.	0.762
LOC106916334	vegfa	ENSPMEP00000025677	ENSPMEP00000027526	Macrophage stimulating 1 receptor a.	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.	0.821
LOC106928125	LOC106916334	ENSPMEP00000004401	ENSPMEP00000025677	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	Macrophage stimulating 1 receptor a.	0.612
LOC106928125	fgf16	ENSPMEP00000004401	ENSPMEP00000013963	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.506
LOC106928125	met	ENSPMEP00000004401	ENSPMEP00000013002	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	MET proto-oncogene, receptor tyrosine kinase.	0.907
LOC106928125	mst1r	ENSPMEP00000004401	ENSPMEP00000012956	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	Macrophage stimulating 1 receptor b.	0.612
fgf16	ENSPMEP00000018794	ENSPMEP00000013963	ENSPMEP00000018794	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.506
fgf16	LOC106916334	ENSPMEP00000013963	ENSPMEP00000025677	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Macrophage stimulating 1 receptor a.	0.597
fgf16	LOC106928125	ENSPMEP00000013963	ENSPMEP00000004401	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family.	0.506
fgf16	met	ENSPMEP00000013963	ENSPMEP00000013002	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	MET proto-oncogene, receptor tyrosine kinase.	0.904
fgf16	mst1r	ENSPMEP00000013963	ENSPMEP00000012956	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Macrophage stimulating 1 receptor b.	0.597