12 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	glmn	Glomulin, FKBP associated protein a. (611 aa)
	rbfox3	RNA binding fox-1 homolog 3b. (281 aa)
	ercc8	Excision repair cross-complementation group 8. (401 aa)
	crbn	Cereblon. (445 aa)
	ddb1	Damage-specific DNA binding protein 1. (1139 aa)
	cul4a	Cullin 4A; Belongs to the cullin family. (646 aa)
	dtl	Denticleless E3 ubiquitin protein ligase homolog (Drosophila). (651 aa)
	det1	DET1 partner of COP1 E3 ubiquitin ligase. (551 aa)
	cop1	COP1 E3 ubiquitin ligase. (696 aa)
	trpc4ap	Transient receptor potential cation channel, subfamily C, member 4 associated protein a. (774 aa)
	dcx	Uncharacterized protein. (350 aa)
	rbx1	Ring-box 1, E3 ubiquitin protein ligase. (108 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cop1	cul4a	ENSPMEP00000002095	ENSPMEP00000011144	COP1 E3 ubiquitin ligase.	Cullin 4A; Belongs to the cullin family.	0.857
cop1	ddb1	ENSPMEP00000002095	ENSPMEP00000009441	COP1 E3 ubiquitin ligase.	Damage-specific DNA binding protein 1.	0.957
cop1	det1	ENSPMEP00000002095	ENSPMEP00000004257	COP1 E3 ubiquitin ligase.	DET1 partner of COP1 E3 ubiquitin ligase.	0.991
cop1	dtl	ENSPMEP00000002095	ENSPMEP00000007240	COP1 E3 ubiquitin ligase.	Denticleless E3 ubiquitin protein ligase homolog (Drosophila).	0.667
cop1	ercc8	ENSPMEP00000002095	ENSPMEP00000025615	COP1 E3 ubiquitin ligase.	Excision repair cross-complementation group 8.	0.908
cop1	rbx1	ENSPMEP00000002095	ENSPMEP00000015315	COP1 E3 ubiquitin ligase.	Ring-box 1, E3 ubiquitin protein ligase.	0.851
crbn	cul4a	ENSPMEP00000009129	ENSPMEP00000011144	Cereblon.	Cullin 4A; Belongs to the cullin family.	0.897
crbn	ddb1	ENSPMEP00000009129	ENSPMEP00000009441	Cereblon.	Damage-specific DNA binding protein 1.	0.980
crbn	rbx1	ENSPMEP00000009129	ENSPMEP00000015315	Cereblon.	Ring-box 1, E3 ubiquitin protein ligase.	0.927
cul4a	cop1	ENSPMEP00000011144	ENSPMEP00000002095	Cullin 4A; Belongs to the cullin family.	COP1 E3 ubiquitin ligase.	0.857
cul4a	crbn	ENSPMEP00000011144	ENSPMEP00000009129	Cullin 4A; Belongs to the cullin family.	Cereblon.	0.897
cul4a	ddb1	ENSPMEP00000011144	ENSPMEP00000009441	Cullin 4A; Belongs to the cullin family.	Damage-specific DNA binding protein 1.	0.986
cul4a	det1	ENSPMEP00000011144	ENSPMEP00000004257	Cullin 4A; Belongs to the cullin family.	DET1 partner of COP1 E3 ubiquitin ligase.	0.886
cul4a	dtl	ENSPMEP00000011144	ENSPMEP00000007240	Cullin 4A; Belongs to the cullin family.	Denticleless E3 ubiquitin protein ligase homolog (Drosophila).	0.968
cul4a	ercc8	ENSPMEP00000011144	ENSPMEP00000025615	Cullin 4A; Belongs to the cullin family.	Excision repair cross-complementation group 8.	0.973
cul4a	rbx1	ENSPMEP00000011144	ENSPMEP00000015315	Cullin 4A; Belongs to the cullin family.	Ring-box 1, E3 ubiquitin protein ligase.	0.972
cul4a	trpc4ap	ENSPMEP00000011144	ENSPMEP00000014775	Cullin 4A; Belongs to the cullin family.	Transient receptor potential cation channel, subfamily C, member 4 associated protein a.	0.572
dcx	rbfox3	ENSPMEP00000014926	ENSPMEP00000019944	Uncharacterized protein.	RNA binding fox-1 homolog 3b.	0.542
ddb1	cop1	ENSPMEP00000009441	ENSPMEP00000002095	Damage-specific DNA binding protein 1.	COP1 E3 ubiquitin ligase.	0.957
ddb1	crbn	ENSPMEP00000009441	ENSPMEP00000009129	Damage-specific DNA binding protein 1.	Cereblon.	0.980