17 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPMEP00000002318	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (113 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (115 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
	naa38	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (114 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	lsm3	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated. (149 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000002318	LSM10	ENSPMEP00000002318	ENSPMEP00000025832	Small nuclear ribonucleoprotein polypeptide F.	LSM10, U7 small nuclear RNA associated.	0.999
ENSPMEP00000002318	SNRPN	ENSPMEP00000002318	ENSPMEP00000017808	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.997
ENSPMEP00000002318	lsm1	ENSPMEP00000002318	ENSPMEP00000020431	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.833
ENSPMEP00000002318	lsm2	ENSPMEP00000002318	ENSPMEP00000016848	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
ENSPMEP00000002318	lsm3	ENSPMEP00000002318	ENSPMEP00000033513	Small nuclear ribonucleoprotein polypeptide F.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.988
ENSPMEP00000002318	lsm4	ENSPMEP00000002318	ENSPMEP00000030150	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.989
ENSPMEP00000002318	lsm5	ENSPMEP00000002318	ENSPMEP00000019255	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.997
ENSPMEP00000002318	lsm6	ENSPMEP00000002318	ENSPMEP00000002919	Small nuclear ribonucleoprotein polypeptide F.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.988
ENSPMEP00000002318	lsm7	ENSPMEP00000002318	ENSPMEP00000009591	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.996
ENSPMEP00000002318	lsm8	ENSPMEP00000002318	ENSPMEP00000033804	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.994
ENSPMEP00000002318	naa38	ENSPMEP00000002318	ENSPMEP00000030307	Small nuclear ribonucleoprotein polypeptide F.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.974
ENSPMEP00000002318	snrpd1	ENSPMEP00000002318	ENSPMEP00000033441	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSPMEP00000002318	snrpd2	ENSPMEP00000002318	ENSPMEP00000024021	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSPMEP00000002318	snrpd3	ENSPMEP00000002318	ENSPMEP00000006921	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.999
ENSPMEP00000002318	snrpe	ENSPMEP00000002318	ENSPMEP00000021559	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSPMEP00000002318	snrpg	ENSPMEP00000002318	ENSPMEP00000016284	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
LSM10	ENSPMEP00000002318	ENSPMEP00000025832	ENSPMEP00000002318	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein polypeptide F.	0.999
LSM10	SNRPN	ENSPMEP00000025832	ENSPMEP00000017808	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein-associated protein.	0.964
LSM10	lsm1	ENSPMEP00000025832	ENSPMEP00000020431	LSM10, U7 small nuclear RNA associated.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.658
LSM10	lsm2	ENSPMEP00000025832	ENSPMEP00000016848	LSM10, U7 small nuclear RNA associated.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.965