28 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106926629	Tudor domain containing 3. (727 aa)
	LOC106933064	Tudor domain containing 7 b. (1152 aa)
	LOC106908295	PHD finger protein 1. (320 aa)
	LOC106921721	Tudor domain containing 6. (2195 aa)
	LOC106911369	Tudor domain containing 12. (777 aa)
	setdb1	SET domain bifurcated histone lysine methyltransferase 1b. (1258 aa)
	snd1	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (911 aa)
	LOC106909736	Lysine (K)-specific demethylase 4A, genome duplicate a. (1011 aa)
	ENSPMEP00000008387	Uncharacterized protein. (1123 aa)
	arid4a	AT rich interactive domain 4A (RBP1-like). (1355 aa)
	mtf2	Metal response element binding transcription factor 2. (620 aa)
	smndc1	Survival motor neuron domain containing 1. (238 aa)
	LOC106907892	Uncharacterized protein. (1175 aa)
	tdrd5	Uncharacterized protein. (895 aa)
	tdrkh	Tudor and KH domain containing. (545 aa)
	phf20	PHD finger protein 20, a. (1001 aa)
	tdrd9	Tudor domain containing 9. (1163 aa)
	rnf17	Ring finger protein 17. (1581 aa)
	LOC106931783	Uncharacterized protein. (735 aa)
	LOC106904937	Tudor domain containing 7 a. (1191 aa)
	LOC106914031	Lysine (K)-specific demethylase 4B. (1227 aa)
	tdrd1	Tudor domain containing 1. (1127 aa)
	ENSPMEP00000019164	Tudor_2 domain-containing protein. (69 aa)
	arid4b	Translocase of outer mitochondrial membrane 20. (1323 aa)
	otud4	OTU domain-containing protein. (918 aa)
	akap1	A kinase (PRKA) anchor protein 1b. (837 aa)
	LOC106918726	Survival of motor neuron 1, telomeric. (283 aa)
	LOC106918705	Uncharacterized protein. (1582 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000008387	LOC106911369	ENSPMEP00000008387	ENSPMEP00000005044	Uncharacterized protein.	Tudor domain containing 12.	0.606
ENSPMEP00000008387	akap1	ENSPMEP00000008387	ENSPMEP00000030100	Uncharacterized protein.	A kinase (PRKA) anchor protein 1b.	0.500
ENSPMEP00000008387	tdrd9	ENSPMEP00000008387	ENSPMEP00000015257	Uncharacterized protein.	Tudor domain containing 9.	0.679
ENSPMEP00000008387	tdrkh	ENSPMEP00000008387	ENSPMEP00000014140	Uncharacterized protein.	Tudor and KH domain containing.	0.706
ENSPMEP00000019164	setdb1	ENSPMEP00000019164	ENSPMEP00000005131	Tudor_2 domain-containing protein.	SET domain bifurcated histone lysine methyltransferase 1b.	0.436
LOC106904937	LOC106911369	ENSPMEP00000017304	ENSPMEP00000005044	Tudor domain containing 7 a.	Tudor domain containing 12.	0.449
LOC106904937	akap1	ENSPMEP00000017304	ENSPMEP00000030100	Tudor domain containing 7 a.	A kinase (PRKA) anchor protein 1b.	0.488
LOC106904937	tdrd9	ENSPMEP00000017304	ENSPMEP00000015257	Tudor domain containing 7 a.	Tudor domain containing 9.	0.648
LOC106904937	tdrkh	ENSPMEP00000017304	ENSPMEP00000014140	Tudor domain containing 7 a.	Tudor and KH domain containing.	0.488
LOC106908295	setdb1	ENSPMEP00000002514	ENSPMEP00000005131	PHD finger protein 1.	SET domain bifurcated histone lysine methyltransferase 1b.	0.436
LOC106911369	ENSPMEP00000008387	ENSPMEP00000005044	ENSPMEP00000008387	Tudor domain containing 12.	Uncharacterized protein.	0.606
LOC106911369	LOC106904937	ENSPMEP00000005044	ENSPMEP00000017304	Tudor domain containing 12.	Tudor domain containing 7 a.	0.449
LOC106911369	LOC106918726	ENSPMEP00000005044	ENSPMEP00000030567	Tudor domain containing 12.	Survival of motor neuron 1, telomeric.	0.647
LOC106911369	LOC106921721	ENSPMEP00000005044	ENSPMEP00000003324	Tudor domain containing 12.	Tudor domain containing 6.	0.606
LOC106911369	LOC106933064	ENSPMEP00000005044	ENSPMEP00000000806	Tudor domain containing 12.	Tudor domain containing 7 b.	0.449
LOC106911369	rnf17	ENSPMEP00000005044	ENSPMEP00000033633	Tudor domain containing 12.	Ring finger protein 17.	0.487
LOC106911369	tdrd1	ENSPMEP00000005044	ENSPMEP00000018933	Tudor domain containing 12.	Tudor domain containing 1.	0.606
LOC106911369	tdrd5	ENSPMEP00000005044	ENSPMEP00000013652	Tudor domain containing 12.	Uncharacterized protein.	0.650
LOC106911369	tdrd9	ENSPMEP00000005044	ENSPMEP00000015257	Tudor domain containing 12.	Tudor domain containing 9.	0.686
LOC106911369	tdrkh	ENSPMEP00000005044	ENSPMEP00000014140	Tudor domain containing 12.	Tudor and KH domain containing.	0.549