(3 nodes) ASC domain superfamily network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRKAB2	Protein kinase AMP-activated non-catalytic subunit beta 2. (267 aa)
	LOC106906561	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b. (265 aa)
	prkab1	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, a. (269 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106906561	PRKAB2	ENSPMEP00000010692	ENSPMEP00000015296	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.928
LOC106906561	prkab1	ENSPMEP00000010692	ENSPMEP00000008378	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, a.	0.909
PRKAB2	LOC106906561	ENSPMEP00000015296	ENSPMEP00000010692	Protein kinase AMP-activated non-catalytic subunit beta 2.	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	0.928
PRKAB2	prkab1	ENSPMEP00000015296	ENSPMEP00000008378	Protein kinase AMP-activated non-catalytic subunit beta 2.	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, a.	0.963
prkab1	LOC106906561	ENSPMEP00000008378	ENSPMEP00000010692	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, a.	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	0.909
prkab1	PRKAB2	ENSPMEP00000008378	ENSPMEP00000015296	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, a.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.963