50 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (296 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (805 aa)
	nup133	Nucleoporin 133. (1135 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	SNRPN	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	nup160	Nucleoporin 160. (1382 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	LOC106915390	Nucleoporin 42. (422 aa)
	nup153	Nucleoporin 153. (1518 aa)
	nup188	Nucleoporin 188. (1727 aa)
	WDR77	WD repeat domain 77. (334 aa)
	nup210	Nucleoporin 210. (1880 aa)
	ENSPMEP00000020113	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (444 aa)
	NUP62	Nucleoporin 62. (550 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	ENSPMEP00000021659	Uncharacterized protein. (360 aa)
	ENSPMEP00000021661	Uncharacterized protein. (297 aa)
	nup98	Nucleoporin 98. (1818 aa)
	LOC106904518	POM121 transmembrane nucleoporin. (1166 aa)
	LOC106917807	Translocated promoter region a, nuclear basket protein. (2082 aa)
	ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (765 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	nup50	Nucleoporin 50. (449 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (654 aa)
	snupn	Snurportin 1. (376 aa)
	nup155	Nucleoporin 155. (1330 aa)
	gemin7	Gem (nuclear organelle) associated protein 7. (128 aa)
	LOC106929963	Translocated promoter region b, nuclear basket protein. (1688 aa)
	nup214	Uncharacterized protein. (1600 aa)
	LOC106918726	Survival of motor neuron 1, telomeric. (283 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (113 aa)
	nup58	Nucleoporin 58. (595 aa)
	clns1a	Chloride channel, nucleotide-sensitive, 1A. (248 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (596 aa)
	ENSPMEP00000002318	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	gemin5	Gem (nuclear organelle) associated protein 5. (1428 aa)
	NUP54	Nucleoporin 54. (621 aa)
	ranbp2	RAN binding protein 2. (3061 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (383 aa)
	nup88	Nucleoporin 88. (713 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	gemin8	Gem (nuclear organelle) associated protein 8. (198 aa)
	nup43	Nucleoporin 43. (370 aa)
	gemin2	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (266 aa)
	prmt5	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (641 aa)
	gemin4	Gem (nuclear organelle) associated protein 4. (1117 aa)
	ndc1	NDC1 transmembrane nucleoporin. (669 aa)
	nup37	Nucleoporin 37. (347 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000002318	ENSPMEP00000020113	ENSPMEP00000002318	ENSPMEP00000020113	Small nuclear ribonucleoprotein polypeptide F.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.593
ENSPMEP00000002318	LOC106915390	ENSPMEP00000002318	ENSPMEP00000018428	Small nuclear ribonucleoprotein polypeptide F.	Nucleoporin 42.	0.640
ENSPMEP00000002318	LOC106917807	ENSPMEP00000002318	ENSPMEP00000023757	Small nuclear ribonucleoprotein polypeptide F.	Translocated promoter region a, nuclear basket protein.	0.621
ENSPMEP00000002318	LOC106918726	ENSPMEP00000002318	ENSPMEP00000030567	Small nuclear ribonucleoprotein polypeptide F.	Survival of motor neuron 1, telomeric.	0.961
ENSPMEP00000002318	LOC106929963	ENSPMEP00000002318	ENSPMEP00000028805	Small nuclear ribonucleoprotein polypeptide F.	Translocated promoter region b, nuclear basket protein.	0.621
ENSPMEP00000002318	NUP54	ENSPMEP00000002318	ENSPMEP00000002596	Small nuclear ribonucleoprotein polypeptide F.	Nucleoporin 54.	0.610
ENSPMEP00000002318	SNRPN	ENSPMEP00000002318	ENSPMEP00000017808	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.997
ENSPMEP00000002318	WDR77	ENSPMEP00000002318	ENSPMEP00000019785	Small nuclear ribonucleoprotein polypeptide F.	WD repeat domain 77.	0.670
ENSPMEP00000002318	clns1a	ENSPMEP00000002318	ENSPMEP00000033838	Small nuclear ribonucleoprotein polypeptide F.	Chloride channel, nucleotide-sensitive, 1A.	0.953
ENSPMEP00000002318	ddx20	ENSPMEP00000002318	ENSPMEP00000024016	Small nuclear ribonucleoprotein polypeptide F.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.882
ENSPMEP00000002318	gemin2	ENSPMEP00000002318	ENSPMEP00000009286	Small nuclear ribonucleoprotein polypeptide F.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.985
ENSPMEP00000002318	gemin4	ENSPMEP00000002318	ENSPMEP00000009789	Small nuclear ribonucleoprotein polypeptide F.	Gem (nuclear organelle) associated protein 4.	0.752
ENSPMEP00000002318	gemin5	ENSPMEP00000002318	ENSPMEP00000002417	Small nuclear ribonucleoprotein polypeptide F.	Gem (nuclear organelle) associated protein 5.	0.777
ENSPMEP00000002318	gemin7	ENSPMEP00000002318	ENSPMEP00000028133	Small nuclear ribonucleoprotein polypeptide F.	Gem (nuclear organelle) associated protein 7.	0.658
ENSPMEP00000002318	gemin8	ENSPMEP00000002318	ENSPMEP00000008335	Small nuclear ribonucleoprotein polypeptide F.	Gem (nuclear organelle) associated protein 8.	0.827
ENSPMEP00000002318	ndc1	ENSPMEP00000002318	ENSPMEP00000010757	Small nuclear ribonucleoprotein polypeptide F.	NDC1 transmembrane nucleoporin.	0.611
ENSPMEP00000002318	nup107	ENSPMEP00000002318	ENSPMEP00000014447	Small nuclear ribonucleoprotein polypeptide F.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.626
ENSPMEP00000002318	nup133	ENSPMEP00000002318	ENSPMEP00000015159	Small nuclear ribonucleoprotein polypeptide F.	Nucleoporin 133.	0.626
ENSPMEP00000002318	nup210	ENSPMEP00000002318	ENSPMEP00000020002	Small nuclear ribonucleoprotein polypeptide F.	Nucleoporin 210.	0.634
ENSPMEP00000002318	nup214	ENSPMEP00000002318	ENSPMEP00000029429	Small nuclear ribonucleoprotein polypeptide F.	Uncharacterized protein.	0.573