STRINGSTRING
ino80d ino80d cul4b cul4b pold2 pold2 gtf2h1 gtf2h1 ercc5 ercc5 xpa xpa LOC106906255 LOC106906255 LOC106911701 LOC106911701 LOC106923920 LOC106923920 cdk7 cdk7 POLE POLE ENSPMEP00000032240 ENSPMEP00000032240 polk polk wbp1 wbp1 ENSPMEP00000030828 ENSPMEP00000030828 LOC106926029 LOC106926029 LOC106931831 LOC106931831 LOC106925417 LOC106925417 gtf2h5 gtf2h5 cops8 cops8 ercc1 ercc1 LOC106929849 LOC106929849 sumo2 sumo2 rps27a rps27a LOC106924789 LOC106924789 mnat1 mnat1 gtf2h4 gtf2h4 LOC106924837 LOC106924837 cops5 cops5 LOC106910889 LOC106910889 actb actb LOC106910274 LOC106910274 mcrs1 mcrs1 pole2 pole2 LOC106920276 LOC106920276 LOC106918268 LOC106918268 chd1l chd1l xpc xpc rfc1 rfc1 ENSPMEP00000024553 ENSPMEP00000024553 ENSPMEP00000023683 ENSPMEP00000023683 ino80e ino80e LOC106916471 LOC106916471 LOC106906886 LOC106906886 ccnh ccnh LOC106906894 LOC106906894 meiob meiob ercc2 ercc2 ENSPMEP00000021685 ENSPMEP00000021685 LOC106909028 LOC106909028 rfc4 rfc4 nfrkb nfrkb YY1 YY1 ruvbl1 ruvbl1 ube2v2 ube2v2 ube2i ube2i parp2 parp2 pold3 pold3 gtf2h3 gtf2h3 ercc4 ercc4 LOC106905490 LOC106905490 ino80 ino80 kctd2 kctd2 ddb2 ddb2 bivm bivm LOC106915420 LOC106915420 LOC106908123 LOC106908123 cops3 cops3 LOC106934012 LOC106934012 pold1 pold1 ube2n ube2n gps1 gps1 rbx1 rbx1 tfpt tfpt LOC106926030 LOC106926030 LOC106928565 LOC106928565 LOC106923389 LOC106923389 ENSPMEP00000014498 ENSPMEP00000014498 ercc3 ercc3 rad23a rad23a rpap3 rpap3 LOC106919377 LOC106919377 uba52 uba52 pole4 pole4 wdr76 wdr76 rfc5 rfc5 pold4 pold4 parp1 parp1 ino80c ino80c cul4a cul4a rpa2 rpa2 ENSPMEP00000010995 ENSPMEP00000010995 rfc2 rfc2 ino80b ino80b atad5 atad5 ddb1 ddb1 sumo1 sumo1 actr8 actr8 LOC106914402 LOC106914402 cops4 cops4 kxd1 kxd1 pcna pcna LOC106905387 LOC106905387 rnf111 rnf111 actr5 actr5 LOC106911418 LOC106911418 cops7a cops7a LOC106914335 LOC106914335 COPS6 COPS6 cops2 cops2 LOC106904547 LOC106904547 RCBTB1 RCBTB1 parp3 parp3 LOC106909031 LOC106909031 pole3 pole3 rpa3 rpa3 rfc3 rfc3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ino80dINO80 complex subunit Da. (1007 aa)
cul4bCullin 4B; Belongs to the cullin family. (868 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (468 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
ercc5Excision repair cross-complementation group 5. (1093 aa)
xpaXeroderma pigmentosum, complementation group A. (275 aa)
LOC106906255RPA_C domain-containing protein. (255 aa)
LOC106911701General transcription factor IIH, polypeptide 2. (169 aa)
LOC106923920Small ubiquitin-related modifier. (94 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (360 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (1123 aa)
ENSPMEP00000032240DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (364 aa)
polkPolymerase (DNA directed) kappa. (898 aa)
wbp1Uncharacterized protein. (483 aa)
ENSPMEP00000030828Ubiquitin-like domain-containing protein. (112 aa)
LOC106926029Uncharacterized protein. (177 aa)
LOC106931831Protein inhibitor of activated STAT, 1b. (656 aa)
LOC106925417Small ubiquitin-related modifier. (94 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
cops8COP9 signalosome subunit 8. (191 aa)
ercc1Excision repair cross-complementation group 1. (356 aa)
LOC106929849SCY domain-containing protein. (125 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
rps27aRibosomal protein S27a. (156 aa)
LOC106924789Protein inhibitor of activated STAT, 1a. (706 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (421 aa)
LOC106924837Centrin 4. (171 aa)
cops5COP9 signalosome subunit 5. (377 aa)
LOC106910889Rep_fac-A_C domain-containing protein. (220 aa)
actbUncharacterized protein. (375 aa)
LOC106910274General transcription factor IIH, polypeptide 2. (181 aa)
mcrs1Microspherule protein 1. (466 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
LOC106920276Small ubiquitin-related modifier. (96 aa)
LOC106918268YY1 transcription factor. (422 aa)
chd1lChromodomain helicase DNA binding protein 1-like. (957 aa)
xpcXeroderma pigmentosum, complementation group C. (930 aa)
rfc1Replication factor C subunit 1. (1167 aa)
ENSPMEP00000024553Uncharacterized protein. (95 aa)
ENSPMEP00000023683Uncharacterized protein; Belongs to the actin family. (202 aa)
ino80eINO80 complex subunit E. (231 aa)
LOC106916471Von Willebrand factor A domain containing 5B2. (1013 aa)
LOC106906886Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (638 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
LOC106906894UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
meiobMethionine sulfoxide reductase B1b. (450 aa)
ercc2Excision repair cross-complementation group 2. (739 aa)
ENSPMEP00000021685Uncharacterized protein; Belongs to the actin family. (224 aa)
LOC106909028Uncharacterized protein. (375 aa)
rfc4Replication factor C (activator 1) 4. (358 aa)
nfrkbNuclear factor related to kappaB binding protein. (1277 aa)
YY1YY1 transcription factor b. (367 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
parp2Poly [ADP-ribose] polymerase. (650 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (438 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (300 aa)
ercc4Excision repair cross-complementation group 4. (892 aa)
LOC106905490MPN domain-containing protein. (276 aa)
ino80INO80 complex ATPase subunit. (1038 aa)
kctd2Potassium channel tetramerization domain containing 2. (271 aa)
ddb2Damage-specific DNA binding protein 2. (492 aa)
bivmBasic, immunoglobulin-like variable motif containing. (502 aa)
LOC106915420Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
LOC106908123Uncharacterized protein. (375 aa)
cops3COP9 signalosome subunit 3. (423 aa)
LOC106934012ATPase family AAA domain containing 5a. (1813 aa)
pold1DNA polymerase. (1105 aa)
ube2nUbiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
gps1G protein pathway suppressor 1. (396 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
tfptTCF3 (E2A) fusion partner. (199 aa)
LOC106926030Uncharacterized protein. (166 aa)
LOC106928565Si:ch73-290k24.6. (745 aa)
LOC106923389Ubiquitin-like domain-containing protein. (77 aa)
ENSPMEP00000014498Si:cabz01080528.1. (599 aa)
ercc3Excision repair cross-complementation group 3. (780 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (382 aa)
rpap3RNA polymerase II associated protein 3. (637 aa)
LOC106919377UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (131 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (589 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
pold4Si:dkey-28b4.7. (108 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
ino80cINO80 complex subunit C. (216 aa)
cul4aCullin 4A; Belongs to the cullin family. (646 aa)
rpa2Replication protein A2. (278 aa)
ENSPMEP00000010995Uncharacterized protein. (230 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
ino80bINO80 complex subunit B. (339 aa)
atad5AAA domain-containing protein. (825 aa)
ddb1Damage-specific DNA binding protein 1. (1139 aa)
sumo1Small ubiquitin-related modifier. (111 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (644 aa)
LOC106914402Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
kxd1KxDL motif containing 1. (186 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (282 aa)
LOC106905387Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
rnf111Ring finger protein 111. (1021 aa)
actr5Actin related protein 5; Belongs to the actin family. (624 aa)
LOC106911418Uncharacterized protein; Belongs to the actin family. (142 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (269 aa)
LOC106914335Ubiquitinyl hydrolase 1. (783 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
cops2COP9 signalosome subunit 2. (443 aa)
LOC106904547RAD23 homolog B, nucleotide excision repair protein. (392 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (554 aa)
parp3Poly [ADP-ribose] polymerase. (522 aa)
LOC106909031Uncharacterized protein. (121 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (150 aa)
rpa3Replication protein A3. (122 aa)
rfc3Replication factor C (activator 1) 3. (376 aa)
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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