(32 nodes) Putative peptidoglycan binding domain network (Poecilia mexicana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106912156	Matrix metalloproteinase-21-like. (580 aa)
	MMP21-2	Matrix metalloproteinase-21-like. (580 aa)
	LOC106918294	Matrix metallopeptidase 17a. (564 aa)
	LOC106926286	Matrix metallopeptidase 30. (473 aa)
	mmp14	Matrix metallopeptidase 14a (membrane-inserted). (557 aa)
	LOC106913062	Matrix metalloproteinase-21-like. (580 aa)
	LOC106913043	Uncharacterized protein. (693 aa)
	LOC106907730	ZnMc domain-containing protein. (494 aa)
	mmp16	Matrix metallopeptidase 16b (membrane-inserted). (612 aa)
	LOC106908664	Matrix metallopeptidase 25b. (569 aa)
	mmp2	Matrix metallopeptidase 2. (657 aa)
	mmp24	Matrix metallopeptidase 24. (629 aa)
	LOC106929449	Matrix metallopeptidase 19. (465 aa)
	LOC106926287	ZnMc domain-containing protein. (471 aa)
	LOC106912139	Uncharacterized protein. (660 aa)
	LOC106918300	Matrix metallopeptidase 17a. (601 aa)
	LOC106912965	Uncharacterized protein. (653 aa)
	ENSPMEP00000015211	Matrix metallopeptidase 17b. (589 aa)
	MMP1	Matrix metallopeptidase 1. (461 aa)
	mmp28	Matrix metallopeptidase 28. (526 aa)
	LOC106906145	Matrix metallopeptidase 20a (enamelysin). (465 aa)
	ENSPMEP00000021215	Uncharacterized protein. (183 aa)
	LOC106926970	Matrix metallopeptidase 14b (membrane-inserted). (618 aa)
	LOC106913372	Uncharacterized protein. (488 aa)
	mmp15	Matrix metallopeptidase 15b. (656 aa)
	LOC106928276	Uncharacterized protein. (661 aa)
	MMP19	Matrix metallopeptidase 19. (448 aa)
	MMP21	Matrix metallopeptidase 21; Belongs to the peptidase M10A family. (580 aa)
	LOC106906144	ZnMc domain-containing protein. (462 aa)
	LOC106906143	Matrix metallopeptidase 13b. (472 aa)
	ENSPMEP00000000475	ZnMc domain-containing protein. (406 aa)
	mmp9	Matrix metallopeptidase 9. (689 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000000475	LOC106906143	ENSPMEP00000000475	ENSPMEP00000000181	ZnMc domain-containing protein.	Matrix metallopeptidase 13b.	0.502
ENSPMEP00000000475	LOC106906144	ENSPMEP00000000475	ENSPMEP00000000180	ZnMc domain-containing protein.	ZnMc domain-containing protein.	0.509
ENSPMEP00000000475	LOC106906145	ENSPMEP00000000475	ENSPMEP00000021017	ZnMc domain-containing protein.	Matrix metallopeptidase 20a (enamelysin).	0.501
ENSPMEP00000000475	LOC106926286	ENSPMEP00000000475	ENSPMEP00000026644	ZnMc domain-containing protein.	Matrix metallopeptidase 30.	0.497
ENSPMEP00000000475	MMP1	ENSPMEP00000000475	ENSPMEP00000017908	ZnMc domain-containing protein.	Matrix metallopeptidase 1.	0.511
ENSPMEP00000000475	mmp2	ENSPMEP00000000475	ENSPMEP00000010920	ZnMc domain-containing protein.	Matrix metallopeptidase 2.	0.467
ENSPMEP00000015211	LOC106906143	ENSPMEP00000015211	ENSPMEP00000000181	Matrix metallopeptidase 17b.	Matrix metallopeptidase 13b.	0.455
ENSPMEP00000015211	LOC106906144	ENSPMEP00000015211	ENSPMEP00000000180	Matrix metallopeptidase 17b.	ZnMc domain-containing protein.	0.455
ENSPMEP00000015211	LOC106906145	ENSPMEP00000015211	ENSPMEP00000021017	Matrix metallopeptidase 17b.	Matrix metallopeptidase 20a (enamelysin).	0.516
ENSPMEP00000015211	LOC106926286	ENSPMEP00000015211	ENSPMEP00000026644	Matrix metallopeptidase 17b.	Matrix metallopeptidase 30.	0.455
ENSPMEP00000015211	MMP1	ENSPMEP00000015211	ENSPMEP00000017908	Matrix metallopeptidase 17b.	Matrix metallopeptidase 1.	0.489
ENSPMEP00000015211	mmp2	ENSPMEP00000015211	ENSPMEP00000010920	Matrix metallopeptidase 17b.	Matrix metallopeptidase 2.	0.455
ENSPMEP00000021215	LOC106906143	ENSPMEP00000021215	ENSPMEP00000000181	Uncharacterized protein.	Matrix metallopeptidase 13b.	0.489
ENSPMEP00000021215	LOC106906144	ENSPMEP00000021215	ENSPMEP00000000180	Uncharacterized protein.	ZnMc domain-containing protein.	0.498
ENSPMEP00000021215	LOC106906145	ENSPMEP00000021215	ENSPMEP00000021017	Uncharacterized protein.	Matrix metallopeptidase 20a (enamelysin).	0.481
ENSPMEP00000021215	LOC106926286	ENSPMEP00000021215	ENSPMEP00000026644	Uncharacterized protein.	Matrix metallopeptidase 30.	0.485
ENSPMEP00000021215	MMP1	ENSPMEP00000021215	ENSPMEP00000017908	Uncharacterized protein.	Matrix metallopeptidase 1.	0.502
ENSPMEP00000021215	mmp2	ENSPMEP00000021215	ENSPMEP00000010920	Uncharacterized protein.	Matrix metallopeptidase 2.	0.467
LOC106906143	ENSPMEP00000000475	ENSPMEP00000000181	ENSPMEP00000000475	Matrix metallopeptidase 13b.	ZnMc domain-containing protein.	0.502
LOC106906143	ENSPMEP00000015211	ENSPMEP00000000181	ENSPMEP00000015211	Matrix metallopeptidase 13b.	Matrix metallopeptidase 17b.	0.455