49 items (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nell2	Neural EGFL like 2a. (388 aa)
	NELL1	Neural EGFL like 1. (484 aa)
	zan	Uncharacterized protein. (1579 aa)
	vwf	Von Willebrand factor. (2378 aa)
	ENSPMEP00000004904	Uncharacterized protein. (3078 aa)
	chrd	Chordin; Belongs to the chordin family. (949 aa)
	LOC106907994	Uncharacterized protein. (826 aa)
	LOC106930803	Uncharacterized protein. (381 aa)
	vwc2	Von Willebrand factor C domain containing 2. (335 aa)
	thbs1	Thrombospondin 1b. (1178 aa)
	ENSPMEP00000011193	Uncharacterized protein. (276 aa)
	LOC106904961	Collagen, type V, alpha 2a. (1308 aa)
	ccn5	Cellular communication network factor 5. (348 aa)
	ENSPMEP00000013258	Uncharacterized protein. (575 aa)
	LOC106930609	Thrombospondin 1a. (1172 aa)
	CCN3	Cellular communication network factor 3. (343 aa)
	LOC106910119	Uncharacterized protein. (981 aa)
	dgcr2	DiGeorge syndrome critical region gene 2. (541 aa)
	ccn1	Cellular communication network factor 1. (376 aa)
	FCGBP	Si:dkey-65b12.6. (2752 aa)
	LOC106932422	Collagen, type I, alpha 1b. (1305 aa)
	LOC106933104	Uncharacterized protein. (731 aa)
	LOC106933098	Uncharacterized protein. (1388 aa)
	LOC106933103	Uncharacterized protein. (479 aa)
	pxdn	Peroxidasin. (1571 aa)
	ccn4	Cellular communication network factor 4a. (354 aa)
	LOC106915175	Uncharacterized protein. (950 aa)
	otog	Otogelin. (2616 aa)
	crim1	Uncharacterized protein. (940 aa)
	LOC106905886	Zgc:113531. (221 aa)
	bmper	BMP binding endothelial regulator. (692 aa)
	LOC106908027	Si:dkey-283b1.7. (241 aa)
	LOC106930819	Si:ch211-106h11.3. (427 aa)
	LOC106931457	Uncharacterized protein. (1750 aa)
	col1a1	Collagen, type I, alpha 1a. (1320 aa)
	vwc2l	Von Willebrand factor C domain containing 2 like. (225 aa)
	jag1	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1239 aa)
	chrdl2	Chordin-like 2. (443 aa)
	ENSPMEP00000029612	Uncharacterized protein. (1509 aa)
	fras1	Fraser extracellular matrix complex subunit 1. (3704 aa)
	thbs2	Thrombospondin 2a. (1185 aa)
	LOC106905652	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1105 aa)
	LOC106912803	Uncharacterized protein. (738 aa)
	LOC106903515	VWFC domain-containing protein. (745 aa)
	ENSPMEP00000033083	Uncharacterized protein. (256 aa)
	LOC106922550	Uncharacterized protein. (381 aa)
	ccn2	Cellular communication network factor 2a. (346 aa)
	LOC106924532	Uncharacterized protein. (359 aa)
	tecta	Tectorin alpha. (2113 aa)

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000004904	ENSPMEP00000033083	ENSPMEP00000004904	ENSPMEP00000033083	Uncharacterized protein.	Uncharacterized protein.	0.617
ENSPMEP00000004904	fras1	ENSPMEP00000004904	ENSPMEP00000029852	Uncharacterized protein.	Fraser extracellular matrix complex subunit 1.	0.617
ENSPMEP00000013258	ENSPMEP00000029612	ENSPMEP00000013258	ENSPMEP00000029612	Uncharacterized protein.	Uncharacterized protein.	0.528
ENSPMEP00000013258	ENSPMEP00000033083	ENSPMEP00000013258	ENSPMEP00000033083	Uncharacterized protein.	Uncharacterized protein.	0.523
ENSPMEP00000013258	LOC106905652	ENSPMEP00000013258	ENSPMEP00000030833	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.417
ENSPMEP00000013258	LOC106907994	ENSPMEP00000013258	ENSPMEP00000008248	Uncharacterized protein.	Uncharacterized protein.	0.417
ENSPMEP00000013258	LOC106910119	ENSPMEP00000013258	ENSPMEP00000015448	Uncharacterized protein.	Uncharacterized protein.	0.417
ENSPMEP00000013258	LOC106930609	ENSPMEP00000013258	ENSPMEP00000014320	Uncharacterized protein.	Thrombospondin 1a.	0.442
ENSPMEP00000013258	LOC106930803	ENSPMEP00000013258	ENSPMEP00000009199	Uncharacterized protein.	Uncharacterized protein.	0.417
ENSPMEP00000013258	LOC106933098	ENSPMEP00000013258	ENSPMEP00000020176	Uncharacterized protein.	Uncharacterized protein.	0.664
ENSPMEP00000013258	NELL1	ENSPMEP00000013258	ENSPMEP00000001009	Uncharacterized protein.	Neural EGFL like 1.	0.417
ENSPMEP00000013258	fras1	ENSPMEP00000013258	ENSPMEP00000029852	Uncharacterized protein.	Fraser extracellular matrix complex subunit 1.	0.523
ENSPMEP00000013258	jag1	ENSPMEP00000013258	ENSPMEP00000028119	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.417
ENSPMEP00000013258	nell2	ENSPMEP00000013258	ENSPMEP00000000961	Uncharacterized protein.	Neural EGFL like 2a.	0.417
ENSPMEP00000013258	thbs1	ENSPMEP00000013258	ENSPMEP00000010851	Uncharacterized protein.	Thrombospondin 1b.	0.442
ENSPMEP00000013258	thbs2	ENSPMEP00000013258	ENSPMEP00000030775	Uncharacterized protein.	Thrombospondin 2a.	0.442
ENSPMEP00000029612	ENSPMEP00000013258	ENSPMEP00000029612	ENSPMEP00000013258	Uncharacterized protein.	Uncharacterized protein.	0.528
ENSPMEP00000029612	ENSPMEP00000033083	ENSPMEP00000029612	ENSPMEP00000033083	Uncharacterized protein.	Uncharacterized protein.	0.617
ENSPMEP00000029612	LOC106933103	ENSPMEP00000029612	ENSPMEP00000020244	Uncharacterized protein.	Uncharacterized protein.	0.599
ENSPMEP00000029612	LOC106933104	ENSPMEP00000029612	ENSPMEP00000020126	Uncharacterized protein.	Uncharacterized protein.	0.467