Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFL81830.1 | SFL93649.1 | SAMN04487963_0065 | SAMN04487963_0620 | DNA polymerase-3 subunit epsilon. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.980 |
| SFL81830.1 | SFL98518.1 | SAMN04487963_0065 | SAMN04487963_0866 | DNA polymerase-3 subunit epsilon. | DNA polymerase-3 subunit epsilon. | 0.927 |
| SFL81830.1 | SFM40344.1 | SAMN04487963_0065 | SAMN04487963_2430 | DNA polymerase-3 subunit epsilon. | DNA polymerase III, delta subunit. | 0.984 |
| SFL81830.1 | SFM48784.1 | SAMN04487963_0065 | SAMN04487963_2625 | DNA polymerase-3 subunit epsilon. | DNA polymerase-3 subunit epsilon. | 0.973 |
| SFL81830.1 | SFM49111.1 | SAMN04487963_0065 | SAMN04487963_2641 | DNA polymerase-3 subunit epsilon. | DNA polymerase III, alpha subunit. | 0.930 |
| SFL81830.1 | SFM55144.1 | SAMN04487963_0065 | SAMN04487963_2921 | DNA polymerase-3 subunit epsilon. | DNA polymerase-3 subunit delta'. | 0.886 |
| SFL81830.1 | SFM62632.1 | SAMN04487963_0065 | SAMN04487963_3165 | DNA polymerase-3 subunit epsilon. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.452 |
| SFL81830.1 | dnaE2 | SAMN04487963_0065 | SAMN04487963_2705 | DNA polymerase-3 subunit epsilon. | DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.752 |
| SFL81830.1 | dnaG | SAMN04487963_0065 | SAMN04487963_1093 | DNA polymerase-3 subunit epsilon. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.558 |
| SFL81830.1 | dnaQ | SAMN04487963_0065 | SAMN04487963_2963 | DNA polymerase-3 subunit epsilon. | DNA polymerase-3 subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.980 |
| SFL81830.1 | dnaX | SAMN04487963_0065 | SAMN04487963_2883 | DNA polymerase-3 subunit epsilon. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.983 |
| SFL81830.1 | ligA | SAMN04487963_0065 | SAMN04487963_1915 | DNA polymerase-3 subunit epsilon. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.803 |
| SFL81830.1 | polA | SAMN04487963_0065 | SAMN04487963_1062 | DNA polymerase-3 subunit epsilon. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.647 |
| SFL81830.1 | rnhA | SAMN04487963_0065 | SAMN04487963_2962 | DNA polymerase-3 subunit epsilon. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.426 |
| SFL81830.1 | rnt | SAMN04487963_0065 | SAMN04487963_2586 | DNA polymerase-3 subunit epsilon. | RNAse T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.697 |
| SFL93649.1 | SFL81830.1 | SAMN04487963_0620 | SAMN04487963_0065 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase-3 subunit epsilon. | 0.980 |
| SFL93649.1 | SFL98518.1 | SAMN04487963_0620 | SAMN04487963_0866 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase-3 subunit epsilon. | 0.993 |
| SFL93649.1 | SFM40344.1 | SAMN04487963_0620 | SAMN04487963_2430 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III, delta subunit. | 0.999 |
| SFL93649.1 | SFM48784.1 | SAMN04487963_0620 | SAMN04487963_2625 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase-3 subunit epsilon. | 0.971 |
| SFL93649.1 | SFM49111.1 | SAMN04487963_0620 | SAMN04487963_2641 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III, alpha subunit. | 0.997 |
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