(8 nodes) cheY-homologous receiver domain network (Neisseria canis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rssB	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	cheY	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	zraR_1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	ompR	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	vraR	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	ntrX	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	OSI06652.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	mrkE	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)

Your Current Organism:

Neisseria canis

NCBI taxonomy Id: 493
Other names: ATCC 14687, CIP 103347, LMG 8383, LMG:8383, N. canis, NCTC 10296, strain H 6

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OSI06652.1	cheY	BWD07_12395	BWD07_04245	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
OSI06652.1	ntrX	BWD07_12395	BWD07_11105	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
OSI06652.1	vraR	BWD07_12395	BWD07_08600	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
OSI06652.1	zraR_1	BWD07_12395	BWD07_08215	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
cheY	OSI06652.1	BWD07_04245	BWD07_12395	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
cheY	mrkE	BWD07_04245	BWD07_00780	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
cheY	ntrX	BWD07_04245	BWD07_11105	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
cheY	ompR	BWD07_04245	BWD07_08395	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
cheY	rssB	BWD07_04245	BWD07_01050	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
cheY	vraR	BWD07_04245	BWD07_08600	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
cheY	zraR_1	BWD07_04245	BWD07_08215	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
mrkE	cheY	BWD07_00780	BWD07_04245	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
ntrX	OSI06652.1	BWD07_11105	BWD07_12395	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
ntrX	cheY	BWD07_11105	BWD07_04245	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
ntrX	ompR	BWD07_11105	BWD07_08395	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
ntrX	vraR	BWD07_11105	BWD07_08600	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
ompR	cheY	BWD07_08395	BWD07_04245	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
ompR	ntrX	BWD07_08395	BWD07_11105	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
ompR	vraR	BWD07_08395	BWD07_08600	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
rssB	cheY	BWD07_01050	BWD07_04245	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741