11 items (Coffea canephora) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A068TYL9	Uncharacterized protein. (360 aa)
	A0A068TZ11	Uncharacterized protein. (469 aa)
	A0A068U3L6	Uncharacterized protein. (593 aa)
	A0A068UFE7	Uncharacterized protein. (501 aa)
	A0A068UMV1	Uncharacterized protein. (463 aa)
	A0A068UNV8	Uncharacterized protein. (329 aa)
	A0A068UYQ9	Glutaredoxin domain-containing protein. (138 aa)
	A0A068V2Y9	Uncharacterized protein. (475 aa)
	A0A068V524	Glutaredoxin domain-containing protein. (153 aa)
	A0A068VA17	Uncharacterized protein. (588 aa)
	A0A068VA61	Uncharacterized protein. (590 aa)

Your Current Organism:

Coffea canephora

NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A068TYL9	A0A068U3L6	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A068TYL9	A0A068V2Y9	Uncharacterized protein.	Uncharacterized protein.	0.906
A0A068TYL9	A0A068VA17	Uncharacterized protein.	Uncharacterized protein.	0.921
A0A068TYL9	A0A068VA61	Uncharacterized protein.	Uncharacterized protein.	0.912
A0A068TZ11	A0A068U3L6	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A068TZ11	A0A068UYQ9	Uncharacterized protein.	Glutaredoxin domain-containing protein.	0.476
A0A068TZ11	A0A068V2Y9	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A068TZ11	A0A068VA17	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A068TZ11	A0A068VA61	Uncharacterized protein.	Uncharacterized protein.	0.909
A0A068U3L6	A0A068TYL9	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A068U3L6	A0A068TZ11	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A068U3L6	A0A068UFE7	Uncharacterized protein.	Uncharacterized protein.	0.902
A0A068U3L6	A0A068UMV1	Uncharacterized protein.	Uncharacterized protein.	0.969
A0A068U3L6	A0A068UNV8	Uncharacterized protein.	Uncharacterized protein.	0.969
A0A068U3L6	A0A068V2Y9	Uncharacterized protein.	Uncharacterized protein.	0.887
A0A068U3L6	A0A068V524	Uncharacterized protein.	Glutaredoxin domain-containing protein.	0.478
A0A068U3L6	A0A068VA17	Uncharacterized protein.	Uncharacterized protein.	0.924
A0A068UFE7	A0A068U3L6	Uncharacterized protein.	Uncharacterized protein.	0.902
A0A068UFE7	A0A068UYQ9	Uncharacterized protein.	Glutaredoxin domain-containing protein.	0.496
A0A068UFE7	A0A068V2Y9	Uncharacterized protein.	Uncharacterized protein.	0.889

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