(5 nodes) Mixed, incl. Microtubule sliding, and F-actin capping protein complex network (Coffea canephora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A068TY46	Uncharacterized protein. (216 aa)
	A0A068UQR3	PMR5N domain-containing protein. (334 aa)
	A0A068UW83	Uncharacterized protein. (377 aa)
	A0A068V1F4	Uncharacterized protein. (211 aa)
	A0A068V283	Uncharacterized protein. (282 aa)

Your Current Organism:

Coffea canephora

NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A068TY46	A0A068UQR3	Uncharacterized protein.	PMR5N domain-containing protein.	0.646
A0A068TY46	A0A068UW83	Uncharacterized protein.	Uncharacterized protein.	0.724
A0A068TY46	A0A068V1F4	Uncharacterized protein.	Uncharacterized protein.	0.723
A0A068TY46	A0A068V283	Uncharacterized protein.	Uncharacterized protein.	0.608
A0A068UQR3	A0A068TY46	PMR5N domain-containing protein.	Uncharacterized protein.	0.646
A0A068UQR3	A0A068UW83	PMR5N domain-containing protein.	Uncharacterized protein.	0.423
A0A068UQR3	A0A068V1F4	PMR5N domain-containing protein.	Uncharacterized protein.	0.924
A0A068UQR3	A0A068V283	PMR5N domain-containing protein.	Uncharacterized protein.	0.537
A0A068UW83	A0A068TY46	Uncharacterized protein.	Uncharacterized protein.	0.724
A0A068UW83	A0A068UQR3	Uncharacterized protein.	PMR5N domain-containing protein.	0.423
A0A068UW83	A0A068V1F4	Uncharacterized protein.	Uncharacterized protein.	0.639
A0A068UW83	A0A068V283	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A068V1F4	A0A068TY46	Uncharacterized protein.	Uncharacterized protein.	0.723
A0A068V1F4	A0A068UQR3	Uncharacterized protein.	PMR5N domain-containing protein.	0.924
A0A068V1F4	A0A068UW83	Uncharacterized protein.	Uncharacterized protein.	0.639
A0A068V1F4	A0A068V283	Uncharacterized protein.	Uncharacterized protein.	0.757
A0A068V283	A0A068TY46	Uncharacterized protein.	Uncharacterized protein.	0.608
A0A068V283	A0A068UQR3	Uncharacterized protein.	PMR5N domain-containing protein.	0.537
A0A068V283	A0A068UW83	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A068V283	A0A068V1F4	Uncharacterized protein.	Uncharacterized protein.	0.757

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