(12 nodes) Mixed, incl. Two-component response regulator ARR-like, and Kelch motif network (Coffea canephora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A068TQ15	Uncharacterized protein. (689 aa)
	A0A068U359	PAS domain-containing protein. (632 aa)
	A0A068U724	Uncharacterized protein. (794 aa)
	A0A068U7Q1	TCP domain-containing protein. (273 aa)
	A0A068UBH0	Uncharacterized protein. (689 aa)
	A0A068UDU7	Uncharacterized protein. (655 aa)
	A0A068UGG5	HTH myb-type domain-containing protein. (296 aa)
	A0A068UN94	HTH myb-type domain-containing protein. (361 aa)
	A0A068UUX8	Uncharacterized protein. (1167 aa)
	A0A068V8M3	PAS domain-containing protein. (645 aa)
	A0A068VDJ9	Uncharacterized protein. (550 aa)
	A0A068VEX3	Response regulatory domain-containing protein. (129 aa)

Your Current Organism:

Coffea canephora

NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A068TQ15	A0A068UBH0	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A068TQ15	A0A068UGG5	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.494
A0A068TQ15	A0A068UN94	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.412
A0A068U359	A0A068U724	PAS domain-containing protein.	Uncharacterized protein.	0.806
A0A068U359	A0A068UBH0	PAS domain-containing protein.	Uncharacterized protein.	0.669
A0A068U359	A0A068UDU7	PAS domain-containing protein.	Uncharacterized protein.	0.806
A0A068U359	A0A068UN94	PAS domain-containing protein.	HTH myb-type domain-containing protein.	0.525
A0A068U359	A0A068UUX8	PAS domain-containing protein.	Uncharacterized protein.	0.970
A0A068U359	A0A068VDJ9	PAS domain-containing protein.	Uncharacterized protein.	0.984
A0A068U359	A0A068VEX3	PAS domain-containing protein.	Response regulatory domain-containing protein.	0.980
A0A068U724	A0A068U359	Uncharacterized protein.	PAS domain-containing protein.	0.806
A0A068U724	A0A068UBH0	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A068U724	A0A068UUX8	Uncharacterized protein.	Uncharacterized protein.	0.924
A0A068U724	A0A068V8M3	Uncharacterized protein.	PAS domain-containing protein.	0.475
A0A068U7Q1	A0A068UBH0	TCP domain-containing protein.	Uncharacterized protein.	0.494
A0A068U7Q1	A0A068VDJ9	TCP domain-containing protein.	Uncharacterized protein.	0.934
A0A068U7Q1	A0A068VEX3	TCP domain-containing protein.	Response regulatory domain-containing protein.	0.920
A0A068UBH0	A0A068TQ15	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A068UBH0	A0A068U359	Uncharacterized protein.	PAS domain-containing protein.	0.669
A0A068UBH0	A0A068U724	Uncharacterized protein.	Uncharacterized protein.	0.898

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