(39 nodes) Red or far-red light signaling pathway network (Coffea canephora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A068V8X5	UBIQUITIN_CONJUGAT_2 domain-containing protein. (195 aa)
	A0A068VMU8	UBIQUITIN_CONJUGAT_2 domain-containing protein. (98 aa)
	A0A068VMN3	SRR1 domain-containing protein. (273 aa)
	A0A068VKF1	PCI domain-containing protein. (439 aa)
	A0A068VJT6	Uncharacterized protein. (56 aa)
	A0A068VJ97	Uncharacterized protein. (106 aa)
	A0A068VHS9	UBIQUITIN_CONJUGAT_2 domain-containing protein. (128 aa)
	A0A068VHF6	Uncharacterized protein. (1077 aa)
	A0A068VGW4	Uncharacterized protein. (84 aa)
	A0A068VD47	Uncharacterized protein. (473 aa)
	A0A068VAD1	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1131 aa)
	A0A068V9P2	BHLH domain-containing protein. (454 aa)
	A0A068V911	F-box domain-containing protein. (325 aa)
	A0A068TKM7	Uncharacterized protein. (354 aa)
	A0A068TME0	CSN8_PSD8_EIF3K domain-containing protein. (97 aa)
	A0A068TMN0	CSN8_PSD8_EIF3K domain-containing protein. (137 aa)
	A0A068TR35	Uncharacterized protein. (881 aa)
	A0A068TU11	Uncharacterized protein. (485 aa)
	A0A068TVQ5	Uncharacterized protein. (447 aa)
	A0A068TWA4	Uncharacterized protein. (835 aa)
	A0A068U2C9	Serine/threonine-protein phosphatase. (476 aa)
	A0A068U7D4	WD_REPEATS_REGION domain-containing protein. (598 aa)
	A0A068UB64	Uncharacterized protein. (682 aa)
	A0A068UB68	Uncharacterized protein. (234 aa)
	A0A068UC09	Uncharacterized protein. (92 aa)
	A0A068UCJ2	Uncharacterized protein. (104 aa)
	A0A068UDF4	Uncharacterized protein. (258 aa)
	A0A068UDL2	Uncharacterized protein. (99 aa)
	A0A068UIT5	PCI domain-containing protein. (397 aa)
	A0A068ULL4	PCI domain-containing protein. (256 aa)
	A0A068UMA2	Uncharacterized protein. (1028 aa)
	A0A068UNN5	Elf4 domain-containing protein. (145 aa)
	A0A068UTE3	Uncharacterized protein. (232 aa)
	A0A068UV36	Uncharacterized protein. (1042 aa)
	A0A068UY63	BZIP domain-containing protein. (157 aa)
	A0A068V0V0	Uncharacterized protein. (260 aa)
	A0A068V3H4	BHLH domain-containing protein. (717 aa)
	A0A068V4X4	SRR1 domain-containing protein. (279 aa)
	A0A068V844	PCI domain-containing protein. (434 aa)

Your Current Organism:

Coffea canephora

NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A068TME0	A0A068TMN0	CSN8_PSD8_EIF3K domain-containing protein.	CSN8_PSD8_EIF3K domain-containing protein.	0.540
A0A068TME0	A0A068UIT5	CSN8_PSD8_EIF3K domain-containing protein.	PCI domain-containing protein.	0.988
A0A068TME0	A0A068ULL4	CSN8_PSD8_EIF3K domain-containing protein.	PCI domain-containing protein.	0.971
A0A068TME0	A0A068V844	CSN8_PSD8_EIF3K domain-containing protein.	PCI domain-containing protein.	0.983
A0A068TME0	A0A068VGW4	CSN8_PSD8_EIF3K domain-containing protein.	Uncharacterized protein.	0.980
A0A068TME0	A0A068VJT6	CSN8_PSD8_EIF3K domain-containing protein.	Uncharacterized protein.	0.971
A0A068TME0	A0A068VKF1	CSN8_PSD8_EIF3K domain-containing protein.	PCI domain-containing protein.	0.980
A0A068TMN0	A0A068TME0	CSN8_PSD8_EIF3K domain-containing protein.	CSN8_PSD8_EIF3K domain-containing protein.	0.540
A0A068TMN0	A0A068UIT5	CSN8_PSD8_EIF3K domain-containing protein.	PCI domain-containing protein.	0.988
A0A068TMN0	A0A068ULL4	CSN8_PSD8_EIF3K domain-containing protein.	PCI domain-containing protein.	0.971
A0A068TMN0	A0A068V844	CSN8_PSD8_EIF3K domain-containing protein.	PCI domain-containing protein.	0.983
A0A068TMN0	A0A068VGW4	CSN8_PSD8_EIF3K domain-containing protein.	Uncharacterized protein.	0.980
A0A068TMN0	A0A068VJT6	CSN8_PSD8_EIF3K domain-containing protein.	Uncharacterized protein.	0.971
A0A068TMN0	A0A068VKF1	CSN8_PSD8_EIF3K domain-containing protein.	PCI domain-containing protein.	0.980
A0A068TR35	A0A068TVQ5	Uncharacterized protein.	Uncharacterized protein.	0.457
A0A068TR35	A0A068UCJ2	Uncharacterized protein.	Uncharacterized protein.	0.484
A0A068TR35	A0A068UY63	Uncharacterized protein.	BZIP domain-containing protein.	0.513
A0A068TR35	A0A068V0V0	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A068TR35	A0A068V3H4	Uncharacterized protein.	BHLH domain-containing protein.	0.982
A0A068TR35	A0A068V911	Uncharacterized protein.	F-box domain-containing protein.	0.434

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