(37 nodes) Gynoecium development network (Coffea canephora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A068TX66	C2H2-type domain-containing protein. (285 aa)
	A0A068V1X4	Uncharacterized protein. (135 aa)
	A0A068V271	Uncharacterized protein. (113 aa)
	A0A068V2L3	G domain-containing protein. (352 aa)
	A0A068V5F8	Uncharacterized protein. (367 aa)
	A0A068V5G2	HGTP_anticodon domain-containing protein. (191 aa)
	A0A068V5Z2	Uncharacterized protein. (92 aa)
	A0A068V738	Uncharacterized protein. (184 aa)
	A0A068VDE3	Lysine--tRNA ligase. (664 aa)
	A0A068VH74	CPSF_A domain-containing protein. (173 aa)
	A0A068VLV2	CPSF_A domain-containing protein. (1033 aa)
	A0A068VNA3	HGTP_anticodon domain-containing protein. (187 aa)
	A0A068TLD6	Uncharacterized protein. (214 aa)
	A0A068TQP4	Homeobox domain-containing protein. (361 aa)
	A0A068TRD1	tRNA-synt_1 domain-containing protein. (195 aa)
	A0A068TRK4	Uncharacterized protein. (931 aa)
	A0A068TUY6	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (625 aa)
	A0A068TWA6	WD_REPEATS_REGION domain-containing protein. (769 aa)
	A0A068TWY0	Uncharacterized protein. (172 aa)
	A0A068TYH8	AA_TRNA_LIGASE_II domain-containing protein. (524 aa)
	A0A068TZK3	Homeobox domain-containing protein. (336 aa)
	A0A068U1C2	C2 domain-containing protein. (2170 aa)
	A0A068U1I1	Uncharacterized protein. (217 aa)
	A0A068U4G8	BHLH domain-containing protein. (407 aa)
	A0A068U8Q7	HGTP_anticodon domain-containing protein. (209 aa)
	A0A068U9H3	AA_TRNA_LIGASE_II domain-containing protein. (448 aa)
	A0A068UEG7	Uncharacterized protein. (629 aa)
	A0A068UG20	WD_REPEATS_REGION domain-containing protein. (375 aa)
	A0A068UH77	BES1_N domain-containing protein. (333 aa)
	A0A068UN46	tRNA-synt_2 domain-containing protein. (99 aa)
	A0A068UNY3	AA_TRNA_LIGASE_II domain-containing protein. (443 aa)
	A0A068UTG7	SET domain-containing protein. (2340 aa)
	A0A068UUE7	Uncharacterized protein. (1517 aa)
	A0A068UYX1	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1049 aa)
	A0A068V0A5	Uncharacterized protein. (1346 aa)
	A0A068V0F4	APC1_C domain-containing protein. (399 aa)
	A0A068V1W5	Uncharacterized protein. (391 aa)

Your Current Organism:

Coffea canephora

NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A068TLD6	A0A068TRD1	Uncharacterized protein.	tRNA-synt_1 domain-containing protein.	0.920
A0A068TLD6	A0A068TRK4	Uncharacterized protein.	Uncharacterized protein.	0.920
A0A068TLD6	A0A068TUY6	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.691
A0A068TLD6	A0A068TYH8	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.427
A0A068TLD6	A0A068UN46	Uncharacterized protein.	tRNA-synt_2 domain-containing protein.	0.576
A0A068TLD6	A0A068UNY3	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.576
A0A068TLD6	A0A068VDE3	Uncharacterized protein.	Lysine--tRNA ligase.	0.632
A0A068TRD1	A0A068TLD6	tRNA-synt_1 domain-containing protein.	Uncharacterized protein.	0.920
A0A068TRD1	A0A068TRK4	tRNA-synt_1 domain-containing protein.	Uncharacterized protein.	0.918
A0A068TRD1	A0A068TUY6	tRNA-synt_1 domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.861
A0A068TRD1	A0A068TYH8	tRNA-synt_1 domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.578
A0A068TRD1	A0A068U8Q7	tRNA-synt_1 domain-containing protein.	HGTP_anticodon domain-containing protein.	0.920
A0A068TRD1	A0A068U9H3	tRNA-synt_1 domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.920
A0A068TRD1	A0A068UN46	tRNA-synt_1 domain-containing protein.	tRNA-synt_2 domain-containing protein.	0.652
A0A068TRD1	A0A068UNY3	tRNA-synt_1 domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.652
A0A068TRD1	A0A068V1X4	tRNA-synt_1 domain-containing protein.	Uncharacterized protein.	0.920
A0A068TRD1	A0A068V5G2	tRNA-synt_1 domain-containing protein.	HGTP_anticodon domain-containing protein.	0.920
A0A068TRD1	A0A068V5Z2	tRNA-synt_1 domain-containing protein.	Uncharacterized protein.	0.920
A0A068TRD1	A0A068VDE3	tRNA-synt_1 domain-containing protein.	Lysine--tRNA ligase.	0.825
A0A068TRD1	A0A068VNA3	tRNA-synt_1 domain-containing protein.	HGTP_anticodon domain-containing protein.	0.920

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