(67 nodes) Circadian rhythm - plant network (Coffea canephora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A068U4P3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	A0A068U536	HTH myb-type domain-containing protein. (96 aa)
	A0A068U724	Uncharacterized protein. (794 aa)
	A0A068U7D4	WD_REPEATS_REGION domain-containing protein. (598 aa)
	A0A068U7Q1	TCP domain-containing protein. (273 aa)
	A0A068U9L8	Uncharacterized protein. (176 aa)
	A0A068UB64	Uncharacterized protein. (682 aa)
	A0A068UB68	Uncharacterized protein. (234 aa)
	A0A068UBH0	Uncharacterized protein. (689 aa)
	A0A068UC09	Uncharacterized protein. (92 aa)
	A0A068UCJ2	Uncharacterized protein. (104 aa)
	A0A068UDL2	Uncharacterized protein. (99 aa)
	A0A068UDU7	Uncharacterized protein. (655 aa)
	A0A068UDZ4	TCP domain-containing protein. (230 aa)
	A0A068UFF2	Uncharacterized protein. (147 aa)
	A0A068UH08	Uncharacterized protein. (173 aa)
	A0A068UI77	Uncharacterized protein. (713 aa)
	A0A068UIM3	RAI1 domain-containing protein. (547 aa)
	A0A068UJ96	HTH myb-type domain-containing protein. (761 aa)
	A0A068UJB8	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (339 aa)
	A0A068UKQ3	Uncharacterized protein. (382 aa)
	A0A068ULI5	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (305 aa)
	A0A068UMA2	Uncharacterized protein. (1028 aa)
	A0A068UTM1	Uncharacterized protein. (541 aa)
	A0A068UUX8	Uncharacterized protein. (1167 aa)
	A0A068UV36	Uncharacterized protein. (1042 aa)
	A0A068UVA8	Uncharacterized protein. (164 aa)
	A0A068UXM6	Uncharacterized protein. (425 aa)
	A0A068TNG6	F-box domain-containing protein. (196 aa)
	A0A068UY63	BZIP domain-containing protein. (157 aa)
	A0A068V2U6	Uncharacterized protein. (174 aa)
	A0A068V3H4	BHLH domain-containing protein. (717 aa)
	A0A068V3I5	Uncharacterized protein. (346 aa)
	A0A068V3N4	Uncharacterized protein. (640 aa)
	A0A068V690	Uncharacterized protein. (172 aa)
	A0A068V8M3	PAS domain-containing protein. (645 aa)
	A0A068VAD1	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1131 aa)
	A0A068VBT4	Uncharacterized protein. (540 aa)
	A0A068VDJ9	Uncharacterized protein. (550 aa)
	A0A068VEC4	Uncharacterized protein. (329 aa)
	A0A068VEX3	Response regulatory domain-containing protein. (129 aa)
	A0A068VHR8	Uncharacterized protein. (186 aa)
	A0A068VIQ4	Chal_sti_synt_C domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (152 aa)
	A0A068VIT0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (328 aa)
	A0A068VJ97	Uncharacterized protein. (106 aa)
	A0A068VJI8	Uncharacterized protein. (97 aa)
	A0A068VLE4	Chal_sti_synt_N domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (172 aa)
	A0A068VM14	Uncharacterized protein. (536 aa)
	A0A068VMH2	Uncharacterized protein. (305 aa)
	A0A068VQ62	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (328 aa)
	A0A068TNX2	Uncharacterized protein. (758 aa)
	A0A068TPY3	Uncharacterized protein. (141 aa)
	A0A068TR35	Uncharacterized protein. (881 aa)
	A0A068TTH2	Photolyase/cryptochrome alpha/beta domain-containing protein. (647 aa)
	A0A068TTM8	Uncharacterized protein. (177 aa)
	A0A068TU71	Uncharacterized protein. (710 aa)
	A0A068TUV7	Uncharacterized protein. (507 aa)
	A0A068TVP2	Chal_sti_synt_N domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (63 aa)
	A0A068TXD5	Uncharacterized protein. (217 aa)
	A0A068TXM3	Photolyase/cryptochrome alpha/beta domain-containing protein. (682 aa)
	A0A068U097	HTH myb-type domain-containing protein. (475 aa)
	A0A068U0V8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	A0A068U151	Uncharacterized protein. (545 aa)
	A0A068U220	Protein kinase domain-containing protein. (202 aa)
	A0A068U351	Protein kinase domain-containing protein. (261 aa)
	A0A068U359	PAS domain-containing protein. (632 aa)
	A0A068U441	Uncharacterized protein. (413 aa)

Your Current Organism:

Coffea canephora

NCBI taxonomy Id: 49390
Other names: C. canephora, Coffea canephora Pierre ex A.Froehner, Coffea canephora var. robusta, Coffea canephora var. robusta (L.Linden) A.Chev., Coffea robusta, Coffea robusta L.Linden, robusta coffee

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A068TNG6	A0A068UUX8	F-box domain-containing protein.	Uncharacterized protein.	0.614
A0A068TNX2	A0A068TR35	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A068TNX2	A0A068TTH2	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.917
A0A068TNX2	A0A068TXM3	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.920
A0A068TNX2	A0A068U097	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.741
A0A068TNX2	A0A068U359	Uncharacterized protein.	PAS domain-containing protein.	0.435
A0A068TNX2	A0A068U724	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A068TNX2	A0A068U7D4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.756
A0A068TNX2	A0A068UB64	Uncharacterized protein.	Uncharacterized protein.	0.756
A0A068TNX2	A0A068UB68	Uncharacterized protein.	Uncharacterized protein.	0.756
A0A068TNX2	A0A068UC09	Uncharacterized protein.	Uncharacterized protein.	0.756
A0A068TNX2	A0A068UDL2	Uncharacterized protein.	Uncharacterized protein.	0.756
A0A068TNX2	A0A068UI77	Uncharacterized protein.	Uncharacterized protein.	0.892
A0A068TNX2	A0A068UJ96	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.874
A0A068TNX2	A0A068UUX8	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A068TNX2	A0A068UVA8	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A068TNX2	A0A068VAD1	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.585
A0A068TNX2	A0A068VDJ9	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A068TNX2	A0A068VEX3	Uncharacterized protein.	Response regulatory domain-containing protein.	0.494
A0A068TNX2	A0A068VJ97	Uncharacterized protein.	Uncharacterized protein.	0.756

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