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HTR12 HTR12 HMGB15 HMGB15 HMGB10 HMGB10 SYD_0 SYD_0 H4_13 H4_13 H4_0 H4_0 A4A49_34105 A4A49_34105 SYD_2 SYD_2 A4A49_29178 A4A49_29178 A4A49_32562 A4A49_32562 HDA19 HDA19
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HTR12Histone h3-like centromeric protein htr12. (231 aa)
HMGB15High mobility group b protein 15. (475 aa)
HMGB10High mobility group b protein 10. (320 aa)
SYD_0Chromatin structure-remodeling complex protein syd. (2768 aa)
H4_13Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
H4_0Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A4A49_34105Zinc finger ccch domain-containing protein 44. (853 aa)
SYD_2Chromatin structure-remodeling complex protein syd. (1657 aa)
A4A49_29178Uncharacterized protein. (398 aa)
A4A49_32562Histone H2A; Belongs to the histone H2A family. (138 aa)
HDA19Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (498 aa)
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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