STRINGSTRING
rffD rffD wbpD wbpD wbpE wbpE glmU glmU exoB exoB vipA vipA rffE rffE capD capD wbpB wbpB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rffDUDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Function of strongly homologous gene; enzyme. (398 aa)
wbpDPutative acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (191 aa)
wbpEUDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase; Function of strongly homologous gene; enzyme. (362 aa)
glmUBifunctional protein GlmU (Includes: UDP-N-acetylglucosamine pyrophosphorylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (431 aa)
exoBUDP-glucose 4-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (340 aa)
vipAVi polysaccharide biosynthesis protein vipA/tviB; Function of strongly homologous gene; enzyme. (422 aa)
rffEUDP-N-acetyl glucosamine-2-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (385 aa)
capDCapsular polysaccharide biosynthesis protein capD1 (putative UDP-sugar epimerase); Function of strongly homologous gene; putative enzyme. (588 aa)
wbpBPutative UDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase WbpB (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (100 aa)
Your Current Organism:
Sulfurovum sp. enrichment
NCBI taxonomy Id: 497650
Other names: S. sp. enrichment culture clone C5, Sulfurovum sp. enrichment culture clone C5
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