(11 nodes) Mixed, incl. Isoprenoid synthase domain superfamily, and Prenyltransferase network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00319	Phytoene synthase. (635 aa)
	VDAG_00320	Phytoene dehydrogenase. (584 aa)
	VDAG_01222	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate. (404 aa)
	VDAG_02194	Decaprenyl-diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family. (458 aa)
	VDAG_03093	Uncharacterized protein. (332 aa)
	VDAG_05564	Cytochrome b2. (288 aa)
	VDAG_05836	Para-hydroxybenzoate-polyprenyltransferase. (342 aa)
	VDAG_06987	Alkyl transferase; Belongs to the UPP synthase family. (366 aa)
	VDAG_08530	Farnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. (347 aa)
	VDAG_08571	Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. (402 aa)
	VDAG_09487	Uncharacterized protein. (120 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00319	VDAG_00320	G2WRY6	G2WRY7	Phytoene synthase.	Phytoene dehydrogenase.	0.997
VDAG_00319	VDAG_01222	G2WRY6	G2WTU9	Phytoene synthase.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.455
VDAG_00319	VDAG_02194	G2WRY6	G2WV53	Phytoene synthase.	Decaprenyl-diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family.	0.932
VDAG_00319	VDAG_03093	G2WRY6	G2X070	Phytoene synthase.	Uncharacterized protein.	0.823
VDAG_00319	VDAG_05836	G2WRY6	G2X6Q4	Phytoene synthase.	Para-hydroxybenzoate-polyprenyltransferase.	0.455
VDAG_00319	VDAG_06987	G2WRY6	G2XA84	Phytoene synthase.	Alkyl transferase; Belongs to the UPP synthase family.	0.823
VDAG_00319	VDAG_08530	G2WRY6	G2XEE5	Phytoene synthase.	Farnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.	0.963
VDAG_00319	VDAG_08571	G2WRY6	G2XEI6	Phytoene synthase.	Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.	0.949
VDAG_00319	VDAG_09487	G2WRY6	G2XH55	Phytoene synthase.	Uncharacterized protein.	0.677
VDAG_00320	VDAG_00319	G2WRY7	G2WRY6	Phytoene dehydrogenase.	Phytoene synthase.	0.997
VDAG_00320	VDAG_01222	G2WRY7	G2WTU9	Phytoene dehydrogenase.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.531
VDAG_00320	VDAG_02194	G2WRY7	G2WV53	Phytoene dehydrogenase.	Decaprenyl-diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family.	0.401
VDAG_00320	VDAG_05836	G2WRY7	G2X6Q4	Phytoene dehydrogenase.	Para-hydroxybenzoate-polyprenyltransferase.	0.531
VDAG_00320	VDAG_08530	G2WRY7	G2XEE5	Phytoene dehydrogenase.	Farnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.	0.667
VDAG_00320	VDAG_08571	G2WRY7	G2XEI6	Phytoene dehydrogenase.	Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.	0.650
VDAG_00320	VDAG_09487	G2WRY7	G2XH55	Phytoene dehydrogenase.	Uncharacterized protein.	0.401
VDAG_01222	VDAG_00319	G2WTU9	G2WRY6	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	Phytoene synthase.	0.455
VDAG_01222	VDAG_00320	G2WTU9	G2WRY7	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	Phytoene dehydrogenase.	0.531
VDAG_01222	VDAG_02194	G2WTU9	G2WV53	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	Decaprenyl-diphosphate synthase subunit 1; Belongs to the FPP/GGPP synthase family.	0.914
VDAG_01222	VDAG_03093	G2WTU9	G2X070	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	Uncharacterized protein.	0.469