(14 nodes) Mixed, incl. Regulation of protein import into nucleus, and Negative regulation of transcription by RNA polymerase III network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_01686	Protein kinase domain-containing protein. (260 aa)
	VDAG_01688	Protein kinase domain-containing protein. (343 aa)
	VDAG_02771	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (391 aa)
	VDAG_02865	Serine/threonine-protein kinase SRPK3. (285 aa)
	VDAG_02419	Serine/threonine-protein kinase SRPK2. (463 aa)
	VDAG_02651	Protein kinase domain-containing protein. (347 aa)
	VDAG_05161	Uncharacterized protein. (398 aa)
	VDAG_05247	Protein kinase domain-containing protein. (418 aa)
	VDAG_05356	Protein kinase domain-containing protein. (371 aa)
	VDAG_07999	Protein kinase domain-containing protein. (156 aa)
	VDAG_09170	Protein kinase domain-containing protein. (631 aa)
	VDAG_09830	Serine/threonine-protein kinase AFC2. (653 aa)
	VDAG_10139	Protein kinase domain-containing protein. (213 aa)
	VDAG_10255	Uncharacterized protein. (93 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_01686	VDAG_01688	G2WVQ0	G2WVQ2	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.449
VDAG_01686	VDAG_10139	G2WVQ0	G2XJ07	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.693
VDAG_01688	VDAG_01686	G2WVQ2	G2WVQ0	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.449
VDAG_09170	VDAG_10255	G2XFP6	G2XJC3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.407
VDAG_10139	VDAG_01686	G2XJ07	G2WVQ0	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.693
VDAG_10255	VDAG_09170	G2XJC3	G2XFP6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.407