(6 nodes) Tim10-like, and TIM22 mitochondrial import inner membrane insertion complex network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_03511	Mitochondrial import inner membrane translocase subunit tim-54. (496 aa)
	VDAG_05736	Mitochondrial import inner membrane translocase subunit tim-9. (88 aa)
	VDAG_06305	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family. (94 aa)
	VDAG_06471	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family. (87 aa)
	VDAG_06853	Mitochondrial import inner membrane translocase subunit TIM10. (93 aa)
	VDAG_08534	Mitochondrial import inner membrane translocase subunit tim-22. (176 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_03511	VDAG_05736	G2WZR9	G2X6F4	Mitochondrial import inner membrane translocase subunit tim-54.	Mitochondrial import inner membrane translocase subunit tim-9.	0.929
VDAG_03511	VDAG_06305	G2WZR9	G2X747	Mitochondrial import inner membrane translocase subunit tim-54.	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	0.616
VDAG_03511	VDAG_06471	G2WZR9	G2X7L3	Mitochondrial import inner membrane translocase subunit tim-54.	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family.	0.577
VDAG_03511	VDAG_06853	G2WZR9	G2X9M1	Mitochondrial import inner membrane translocase subunit tim-54.	Mitochondrial import inner membrane translocase subunit TIM10.	0.953
VDAG_03511	VDAG_08534	G2WZR9	G2XEE9	Mitochondrial import inner membrane translocase subunit tim-54.	Mitochondrial import inner membrane translocase subunit tim-22.	0.963
VDAG_05736	VDAG_03511	G2X6F4	G2WZR9	Mitochondrial import inner membrane translocase subunit tim-9.	Mitochondrial import inner membrane translocase subunit tim-54.	0.929
VDAG_05736	VDAG_06305	G2X6F4	G2X747	Mitochondrial import inner membrane translocase subunit tim-9.	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	0.874
VDAG_05736	VDAG_06471	G2X6F4	G2X7L3	Mitochondrial import inner membrane translocase subunit tim-9.	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family.	0.864
VDAG_05736	VDAG_06853	G2X6F4	G2X9M1	Mitochondrial import inner membrane translocase subunit tim-9.	Mitochondrial import inner membrane translocase subunit TIM10.	0.999
VDAG_05736	VDAG_08534	G2X6F4	G2XEE9	Mitochondrial import inner membrane translocase subunit tim-9.	Mitochondrial import inner membrane translocase subunit tim-22.	0.995
VDAG_06305	VDAG_03511	G2X747	G2WZR9	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit tim-54.	0.616
VDAG_06305	VDAG_05736	G2X747	G2X6F4	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit tim-9.	0.874
VDAG_06305	VDAG_06471	G2X747	G2X7L3	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family.	0.998
VDAG_06305	VDAG_06853	G2X747	G2X9M1	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit TIM10.	0.978
VDAG_06305	VDAG_08534	G2X747	G2XEE9	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit tim-22.	0.712
VDAG_06471	VDAG_03511	G2X7L3	G2WZR9	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit tim-54.	0.577
VDAG_06471	VDAG_05736	G2X7L3	G2X6F4	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit tim-9.	0.864
VDAG_06471	VDAG_06305	G2X7L3	G2X747	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit TIM8; Belongs to the small Tim family.	0.998
VDAG_06471	VDAG_06853	G2X7L3	G2X9M1	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit TIM10.	0.991
VDAG_06471	VDAG_08534	G2X7L3	G2XEE9	Mitochondrial import inner membrane translocase subunit tim-13; Belongs to the small Tim family.	Mitochondrial import inner membrane translocase subunit tim-22.	0.687