186 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00538	U2 small nuclear ribonucleoprotein A. (264 aa)
	VDAG_00594	Uncharacterized protein. (302 aa)
	VDAG_00613	THO complex subunit 2. (2374 aa)
	VDAG_00710	C2H2-type domain-containing protein. (236 aa)
	VDAG_00760	PWI domain-containing protein. (687 aa)
	VDAG_00012	Pre-mRNA-splicing factor prp1. (718 aa)
	VDAG_00074	Polyadenylate-binding protein. (205 aa)
	VDAG_00164	Uncharacterized protein. (397 aa)
	VDAG_00165	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (973 aa)
	VDAG_00222	G-patch domain-containing protein. (507 aa)
	VDAG_00276	ATP-dependent helicase NAM7. (1099 aa)
	VDAG_00345	Glycine-rich protein. (375 aa)
	VDAG_00349	SAP domain-containing protein. (662 aa)
	VDAG_00371	Thermotolerance protein. (1315 aa)
	VDAG_00377	Nonsense-mediated mRNA decay protein. (1070 aa)
	VDAG_00399	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	VDAG_01609	CID domain-containing protein. (820 aa)
	VDAG_00894	ATP-dependent RNA helicase DHX8. (675 aa)
	VDAG_00964	Uncharacterized protein. (278 aa)
	VDAG_00969	U5 small nuclear ribonucleoprotein component. (983 aa)
	VDAG_01004	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (181 aa)
	VDAG_01039	Uncharacterized protein. (174 aa)
	VDAG_01045	RNA-binding protein 8A. (150 aa)
	VDAG_01132	Pre-mRNA-processing factor 17. (531 aa)
	VDAG_01313	Uncharacterized protein. (144 aa)
	VDAG_01354	Uncharacterized protein. (128 aa)
	VDAG_01480	Uncharacterized protein. (207 aa)
	VDAG_01644	Pre-mRNA-splicing factor slt-11. (381 aa)
	VDAG_01650	C2H2-type domain-containing protein. (176 aa)
	VDAG_01707	Rna-binding protein. (800 aa)
	VDAG_01780	ATP-dependent RNA helicase SUB2. (513 aa)
	VDAG_01885	Uncharacterized protein. (220 aa)
	VDAG_01886	Uncharacterized protein. (241 aa)
	VDAG_01916	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (153 aa)
	VDAG_01954	U4/U6.U5 tri-snRNP-associated protein snu66. (650 aa)
	VDAG_01971	Branchpoint-bridging protein. (327 aa)
	VDAG_02005	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (770 aa)
	VDAG_02007	LSM domain-containing protein. (79 aa)
	VDAG_02020	RRM domain-containing protein. (673 aa)
	VDAG_02023	DUF866 domain-containing protein. (160 aa)
	VDAG_02725	RRM domain-containing protein. (309 aa)
	VDAG_02758	RNA-binding motif protein. (333 aa)
	VDAG_02778	Pre-mRNA-splicing factor cwc25. (372 aa)
	VDAG_02878	RNA-binding post-transcriptional regulator csx1. (418 aa)
	VDAG_02435	Pre-mRNA-splicing factor cwc24. (336 aa)
	VDAG_02439	Pre-mRNA-splicing factor SLU7. (468 aa)
	VDAG_02485	RRM domain-containing protein. (361 aa)
	VDAG_02556	Splicing factor subunit; Belongs to the SF3B5 family. (117 aa)
	VDAG_02606	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (509 aa)
	VDAG_02645	Pre-mRNA-splicing factor ISY1. (245 aa)
	VDAG_02689	Pre-mRNA-splicing factor 38A. (272 aa)
	VDAG_03123	Pre-mRNA-processing factor 39. (576 aa)
	VDAG_03152	mRNA export factor mex67. (649 aa)
	VDAG_03173	Uncharacterized protein. (213 aa)
	VDAG_03182	U2 small nuclear ribonucleoprotein B. (194 aa)
	VDAG_03244	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (963 aa)
	VDAG_03252	Glycine-rich RNA-binding protein. (175 aa)
	VDAG_03445	Serine/threonine-protein kinase prp4. (838 aa)
	VDAG_03509	Splicing factor 3A subunit 2. (241 aa)
	VDAG_03004	PWI domain-containing protein. (397 aa)
	VDAG_03011	Uncharacterized protein. (698 aa)
	VDAG_03032	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	VDAG_03063	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (589 aa)
	VDAG_03069	Pre-mRNA branch site protein p14. (117 aa)
	VDAG_03726	Uncharacterized protein. (305 aa)
	VDAG_03727	Uncharacterized protein. (227 aa)
	VDAG_03765	Uncharacterized protein. (651 aa)
	VDAG_03949	Uncharacterized protein. (107 aa)
	VDAG_04038	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
	VDAG_04264	U2 snRNP component prp10. (1223 aa)
	VDAG_04308	Poly(RC)-binding protein. (477 aa)
	VDAG_04354	Pre-mRNA-processing ATP-dependent RNA helicase PRP5. (1182 aa)
	VDAG_04370	RRM domain-containing protein. (440 aa)
	VDAG_04431	U4/U6 small nuclear ribonucleoprotein Prp4. (515 aa)
	VDAG_04461	Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family. (683 aa)
	VDAG_04465	C2H2-type domain-containing protein. (891 aa)
	VDAG_04131	Peptidyl-prolyl cis-trans isomerase cyp15. (620 aa)
	VDAG_04166	RED_N domain-containing protein. (538 aa)
	VDAG_04191	Pre-mRNA-splicing factor brr2. (2213 aa)
	VDAG_04200	Splicing factor U2AF 23 kDa subunit. (210 aa)
	VDAG_04215	RNA binding domain-containing protein. (329 aa)
	VDAG_04565	Uncharacterized protein. (472 aa)
	VDAG_04577	RNA-binding protein. (344 aa)
	VDAG_04652	Branchpoint-bridging protein. (590 aa)
	VDAG_04655	SAP domain-containing protein. (279 aa)
	VDAG_04682	Uncharacterized protein. (378 aa)
	VDAG_05006	Endonuclease/exonuclease/phosphatase family. (509 aa)
	VDAG_05067	Uncharacterized protein. (304 aa)
	VDAG_05368	SEC63 domain-containing protein. (460 aa)
	VDAG_05376	zf-U1 domain-containing protein. (286 aa)
	VDAG_05479	Ser/Thr protein phosphatase family protein. (663 aa)
	VDAG_05616	WD repeat-containing protein. (356 aa)
	VDAG_05627	DUF1716 domain-containing protein. (575 aa)
	VDAG_05301	LUC7 protein. (271 aa)
	VDAG_05306	C2H2-type domain-containing protein. (359 aa)
	VDAG_05311	FF domain-containing protein. (583 aa)
	VDAG_05331	Acid phosphatase. (389 aa)
	VDAG_05699	Uncharacterized protein. (41 aa)
	VDAG_05715	Uncharacterized protein. (234 aa)
	VDAG_05729	Pre-mRNA-splicing factor CWC21. (175 aa)
	VDAG_05804	Pre-mRNA-splicing factor cwc15. (246 aa)
	VDAG_05862	Zn(2)-C6 fungal-type domain-containing protein. (512 aa)
	VDAG_05874	Nuclear cap-binding protein subunit 2. (186 aa)
	VDAG_05893	U1 small nuclear ribonucleoprotein. (416 aa)
	VDAG_05919	Pre-mRNA-splicing factor SPP2. (403 aa)
	VDAG_05943	Uncharacterized protein. (1024 aa)
	VDAG_05945	Cell cycle control protein cwf14. (148 aa)
	VDAG_06427	Pre-mRNA-splicing factor RSE1. (1230 aa)
	VDAG_06470	DUF2040 domain-containing protein. (440 aa)
	VDAG_06495	Poly(RC)-binding protein. (514 aa)
	VDAG_06534	Uncharacterized protein. (707 aa)
	VDAG_06536	Pre-mRNA-splicing factor cwc22. (951 aa)
	VDAG_06546	WD repeat-containing protein. (550 aa)
	VDAG_06567	Pre-mRNA-splicing factor ini1. (110 aa)
	VDAG_06568	Pinin_SDK_memA domain-containing protein. (318 aa)
	VDAG_06583	Pre-mRNA-splicing factor syf-2. (129 aa)
	VDAG_06584	Uncharacterized protein. (106 aa)
	USB1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (345 aa)
	VDAG_06186	Small nuclear ribonucleoprotein G. (85 aa)
	VDAG_06633	Peptidyl-prolyl cis-trans isomerase cyp8. (569 aa)
	VDAG_06638	Uncharacterized protein. (317 aa)
	VDAG_06648	Nucleolysin TIA-1. (489 aa)
	VDAG_06654	Intron-binding protein aquarius. (1267 aa)
	VDAG_06655	THO complex subunit 1. (858 aa)
	VDAG_06680	RRM domain-containing protein. (209 aa)
	VDAG_06692	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22. (1487 aa)
	VDAG_07119	Rhamnogalacturonate lyase. (668 aa)
	VDAG_06956	Uncharacterized protein. (211 aa)
	VDAG_07019	RNA-binding protein rsd1. (570 aa)
	VDAG_07025	Peptidyl-prolyl isomerase CWC27. (546 aa)
	VDAG_07038	Uncharacterized protein. (1998 aa)
	VDAG_07100	Uncharacterized protein. (268 aa)
	VDAG_07434	Tudor domain-containing protein. (509 aa)
	VDAG_07491	NACHT and Ankyrin domain-containing protein. (755 aa)
	VDAG_07803	Cell cycle control protein cwf19. (707 aa)
	VDAG_07829	Mago nashi protein. (154 aa)
	VDAG_07985	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22. (1190 aa)
	VDAG_08083	XAP5 domain-containing protein. (378 aa)
	VDAG_08262	Rick_17kDa_Anti domain-containing protein. (229 aa)
	VDAG_08338	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (1357 aa)
	VDAG_08418	Cell cycle control protein cwf16. (247 aa)
	VDAG_08421	Mitogen-activated protein kinase organizer 1. (254 aa)
	VDAG_08432	Cap binding protein. (795 aa)
	VDAG_08454	Splicing factor 3B subunit 4. (498 aa)
	VDAG_08466	Pre-mRNA-splicing factor CWC2. (411 aa)
	VDAG_08533	Pre-mRNA-processing protein. (536 aa)
	VDAG_08679	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
	VDAG_08683	GTP-binding protein EsdC. (326 aa)
	VDAG_08700	Uncharacterized protein. (357 aa)
	VDAG_08765	Uncharacterized protein. (148 aa)
	VDAG_08777	Pre-mRNA-processing protein prp40. (839 aa)
	VDAG_08828	Pre-mRNA-splicing factor clf1. (673 aa)
	VDAG_08829	Pre-mRNA-processing factor 31. (596 aa)
	VDAG_08833	THO complex subunit 3. (339 aa)
	VDAG_08859	Pre-mRNA-splicing factor prp46. (482 aa)
	VDAG_09083	Uncharacterized protein. (250 aa)
	VDAG_08950	Activating signal cointegrator 1 complex subunit 3. (1980 aa)
	VDAG_08864	RRM domain-containing protein. (256 aa)
	VDAG_08873	IDC1 protein. (1580 aa)
	VDAG_08912	GYF domain-containing protein. (466 aa)
	VDAG_08924	Peptidyl-prolyl cis-trans isomerase E. (153 aa)
	VDAG_08927	Sde2_N_Ubi domain-containing protein. (288 aa)
	VDAG_09233	MFAP1 domain-containing protein. (278 aa)
	VDAG_09240	Small nuclear ribonucleoprotein Sm D2. (122 aa)
	VDAG_09309	Splicing factor 3A subunit 3. (500 aa)
	VDAG_09310	ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family. (400 aa)
	VDAG_09359	Meiotic recombination protein rec12. (425 aa)
	VDAG_09437	RNP domain-containing protein. (458 aa)
	VDAG_09478	Uncharacterized protein. (263 aa)
	VDAG_09482	Smad nuclear-interacting protein. (318 aa)
	VDAG_09513	Zn(2)-C6 fungal-type domain-containing protein. (879 aa)
	VDAG_09663	Cell cycle control protein cwf8. (483 aa)
	VDAG_09994	Uncharacterized protein. (208 aa)
	VDAG_10009	Splicing factor 3B subunit 2. (534 aa)
	VDAG_10034	U4/U6 small nuclear ribonucleoprotein Prp3. (458 aa)
	VDAG_10109	G patch domain-containing protein. (1183 aa)
	VDAG_10099	Pre-mRNA splicing factor. (322 aa)
	VDAG_10131	Pre-mRNA-splicing factor CWC26. (332 aa)
	VDAG_10214	G-patch domain-containing protein. (862 aa)
	VDAG_10253	Pre-mRNA-splicing factor cef-1. (780 aa)
	VDAG_10349	SMB protein. (220 aa)
	VDAG_10316	Pre-mRNA-splicing factor sap114. (518 aa)
	VDAG_10305	Pre-mRNA-splicing factor spp42. (2874 aa)
	VDAG_10422	Pre-mRNA-splicing factor SYF1. (822 aa)
	VDAG_10424	U1 small nuclear ribonucleoprotein A. (246 aa)
	VDAG_10443	Rhamnogalacturonan lyase. (654 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
USB1	VDAG_07803	G2X8G4	G2XCC1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.	Cell cycle control protein cwf19.	0.420
USB1	VDAG_08533	G2X8G4	G2XEE8	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.	Pre-mRNA-processing protein.	0.458
USB1	VDAG_08859	G2X8G4	G2XFC7	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.	Pre-mRNA-splicing factor prp46.	0.548
USB1	VDAG_08924	G2X8G4	G2XGD7	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.	Peptidyl-prolyl cis-trans isomerase E.	0.461
USB1	VDAG_09663	G2X8G4	G2XI13	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.	Cell cycle control protein cwf8.	0.844
USB1	VDAG_10109	G2X8G4	G2XIR1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.	G patch domain-containing protein.	0.477
USB1	VDAG_10253	G2X8G4	G2XJC1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.	Pre-mRNA-splicing factor cef-1.	0.530
USB1	VDAG_10422	G2X8G4	G2XJU0	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family.	Pre-mRNA-splicing factor SYF1.	0.584
VDAG_00012	VDAG_00164	G2WR29	G2WRI1	Pre-mRNA-splicing factor prp1.	Uncharacterized protein.	0.538
VDAG_00012	VDAG_00165	G2WR29	G2WRI2	Pre-mRNA-splicing factor prp1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.	0.569
VDAG_00012	VDAG_00371	G2WR29	G2WS38	Pre-mRNA-splicing factor prp1.	Thermotolerance protein.	0.875
VDAG_00012	VDAG_00399	G2WR29	G2WS66	Pre-mRNA-splicing factor prp1.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.997
VDAG_00012	VDAG_00538	G2WR29	G2WQ96	Pre-mRNA-splicing factor prp1.	U2 small nuclear ribonucleoprotein A.	0.911
VDAG_00012	VDAG_00710	G2WR29	G2WQR8	Pre-mRNA-splicing factor prp1.	C2H2-type domain-containing protein.	0.973
VDAG_00012	VDAG_00969	G2WR29	G2WT46	Pre-mRNA-splicing factor prp1.	U5 small nuclear ribonucleoprotein component.	0.999
VDAG_00012	VDAG_01004	G2WR29	G2WT81	Pre-mRNA-splicing factor prp1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.667
VDAG_00012	VDAG_01132	G2WR29	G2WTK9	Pre-mRNA-splicing factor prp1.	Pre-mRNA-processing factor 17.	0.636
VDAG_00012	VDAG_01354	G2WR29	G2WU81	Pre-mRNA-splicing factor prp1.	Uncharacterized protein.	0.486
VDAG_00012	VDAG_01780	G2WR29	G2WVZ4	Pre-mRNA-splicing factor prp1.	ATP-dependent RNA helicase SUB2.	0.707
VDAG_00012	VDAG_01954	G2WR29	G2WWG8	Pre-mRNA-splicing factor prp1.	U4/U6.U5 tri-snRNP-associated protein snu66.	0.998