STRINGSTRING
VDAG_00538 VDAG_00538 VDAG_00710 VDAG_00710 VDAG_00012 VDAG_00012 VDAG_00164 VDAG_00164 VDAG_00165 VDAG_00165 VDAG_00222 VDAG_00222 VDAG_00371 VDAG_00371 VDAG_00399 VDAG_00399 VDAG_01609 VDAG_01609 VDAG_00894 VDAG_00894 VDAG_00969 VDAG_00969 VDAG_01004 VDAG_01004 VDAG_01132 VDAG_01132 VDAG_01354 VDAG_01354 VDAG_01480 VDAG_01480 VDAG_01644 VDAG_01644 VDAG_01916 VDAG_01916 VDAG_01954 VDAG_01954 VDAG_02005 VDAG_02005 VDAG_02007 VDAG_02007 VDAG_02023 VDAG_02023 VDAG_02758 VDAG_02758 VDAG_02778 VDAG_02778 VDAG_02435 VDAG_02435 VDAG_02439 VDAG_02439 VDAG_02556 VDAG_02556 VDAG_02606 VDAG_02606 VDAG_02645 VDAG_02645 VDAG_02689 VDAG_02689 VDAG_03182 VDAG_03182 VDAG_03244 VDAG_03244 VDAG_03509 VDAG_03509 VDAG_03004 VDAG_03004 VDAG_03011 VDAG_03011 VDAG_03032 VDAG_03032 VDAG_03069 VDAG_03069 VDAG_03726 VDAG_03726 VDAG_04038 VDAG_04038 VDAG_04264 VDAG_04264 VDAG_04354 VDAG_04354 VDAG_04431 VDAG_04431 VDAG_04461 VDAG_04461 VDAG_04131 VDAG_04131 VDAG_04166 VDAG_04166 VDAG_04191 VDAG_04191 VDAG_04565 VDAG_04565 VDAG_05067 VDAG_05067 VDAG_05376 VDAG_05376 VDAG_05616 VDAG_05616 VDAG_05627 VDAG_05627 VDAG_05306 VDAG_05306 VDAG_05311 VDAG_05311 VDAG_05715 VDAG_05715 VDAG_05729 VDAG_05729 VDAG_05804 VDAG_05804 VDAG_05862 VDAG_05862 VDAG_05893 VDAG_05893 VDAG_05919 VDAG_05919 VDAG_05945 VDAG_05945 VDAG_06427 VDAG_06427 VDAG_06534 VDAG_06534 VDAG_06536 VDAG_06536 VDAG_06546 VDAG_06546 VDAG_06567 VDAG_06567 VDAG_06583 VDAG_06583 VDAG_06584 VDAG_06584 VDAG_06186 VDAG_06186 VDAG_06633 VDAG_06633 VDAG_06654 VDAG_06654 VDAG_07119 VDAG_07119 VDAG_06956 VDAG_06956 VDAG_07025 VDAG_07025 VDAG_07434 VDAG_07434 VDAG_07491 VDAG_07491 VDAG_07803 VDAG_07803 VDAG_07985 VDAG_07985 VDAG_08418 VDAG_08418 VDAG_08454 VDAG_08454 VDAG_08466 VDAG_08466 VDAG_08533 VDAG_08533 VDAG_08679 VDAG_08679 VDAG_08683 VDAG_08683 VDAG_08828 VDAG_08828 VDAG_08829 VDAG_08829 VDAG_08859 VDAG_08859 VDAG_08924 VDAG_08924 VDAG_09233 VDAG_09233 VDAG_09240 VDAG_09240 VDAG_09309 VDAG_09309 VDAG_09482 VDAG_09482 VDAG_09663 VDAG_09663 VDAG_10009 VDAG_10009 VDAG_10034 VDAG_10034 VDAG_10131 VDAG_10131 VDAG_10214 VDAG_10214 VDAG_10253 VDAG_10253 VDAG_10349 VDAG_10349 VDAG_10316 VDAG_10316 VDAG_10305 VDAG_10305 VDAG_10422 VDAG_10422 VDAG_10424 VDAG_10424 VDAG_10443 VDAG_10443
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_00538U2 small nuclear ribonucleoprotein A. (264 aa)
VDAG_00710C2H2-type domain-containing protein. (236 aa)
VDAG_00012Pre-mRNA-splicing factor prp1. (718 aa)
VDAG_00164Uncharacterized protein. (397 aa)
VDAG_00165Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (973 aa)
VDAG_00222G-patch domain-containing protein. (507 aa)
VDAG_00371Thermotolerance protein. (1315 aa)
VDAG_00399Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
VDAG_01609CID domain-containing protein. (820 aa)
VDAG_00894ATP-dependent RNA helicase DHX8. (675 aa)
VDAG_00969U5 small nuclear ribonucleoprotein component. (983 aa)
VDAG_01004Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (181 aa)
VDAG_01132Pre-mRNA-processing factor 17. (531 aa)
VDAG_01354Uncharacterized protein. (128 aa)
VDAG_01480Uncharacterized protein. (207 aa)
VDAG_01644Pre-mRNA-splicing factor slt-11. (381 aa)
VDAG_01916Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (153 aa)
VDAG_01954U4/U6.U5 tri-snRNP-associated protein snu66. (650 aa)
VDAG_02005Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (770 aa)
VDAG_02007LSM domain-containing protein. (79 aa)
VDAG_02023DUF866 domain-containing protein. (160 aa)
VDAG_02758RNA-binding motif protein. (333 aa)
VDAG_02778Pre-mRNA-splicing factor cwc25. (372 aa)
VDAG_02435Pre-mRNA-splicing factor cwc24. (336 aa)
VDAG_02439Pre-mRNA-splicing factor SLU7. (468 aa)
VDAG_02556Splicing factor subunit; Belongs to the SF3B5 family. (117 aa)
VDAG_02606Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (509 aa)
VDAG_02645Pre-mRNA-splicing factor ISY1. (245 aa)
VDAG_02689Pre-mRNA-splicing factor 38A. (272 aa)
VDAG_03182U2 small nuclear ribonucleoprotein B. (194 aa)
VDAG_03244Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (963 aa)
VDAG_03509Splicing factor 3A subunit 2. (241 aa)
VDAG_03004PWI domain-containing protein. (397 aa)
VDAG_03011Uncharacterized protein. (698 aa)
VDAG_03032Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
VDAG_03069Pre-mRNA branch site protein p14. (117 aa)
VDAG_03726Uncharacterized protein. (305 aa)
VDAG_04038Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
VDAG_04264U2 snRNP component prp10. (1223 aa)
VDAG_04354Pre-mRNA-processing ATP-dependent RNA helicase PRP5. (1182 aa)
VDAG_04431U4/U6 small nuclear ribonucleoprotein Prp4. (515 aa)
VDAG_04461Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family. (683 aa)
VDAG_04131Peptidyl-prolyl cis-trans isomerase cyp15. (620 aa)
VDAG_04166RED_N domain-containing protein. (538 aa)
VDAG_04191Pre-mRNA-splicing factor brr2. (2213 aa)
VDAG_04565Uncharacterized protein. (472 aa)
VDAG_05067Uncharacterized protein. (304 aa)
VDAG_05376zf-U1 domain-containing protein. (286 aa)
VDAG_05616WD repeat-containing protein. (356 aa)
VDAG_05627DUF1716 domain-containing protein. (575 aa)
VDAG_05306C2H2-type domain-containing protein. (359 aa)
VDAG_05311FF domain-containing protein. (583 aa)
VDAG_05715Uncharacterized protein. (234 aa)
VDAG_05729Pre-mRNA-splicing factor CWC21. (175 aa)
VDAG_05804Pre-mRNA-splicing factor cwc15. (246 aa)
VDAG_05862Zn(2)-C6 fungal-type domain-containing protein. (512 aa)
VDAG_05893U1 small nuclear ribonucleoprotein. (416 aa)
VDAG_05919Pre-mRNA-splicing factor SPP2. (403 aa)
VDAG_05945Cell cycle control protein cwf14. (148 aa)
VDAG_06427Pre-mRNA-splicing factor RSE1. (1230 aa)
VDAG_06534Uncharacterized protein. (707 aa)
VDAG_06536Pre-mRNA-splicing factor cwc22. (951 aa)
VDAG_06546WD repeat-containing protein. (550 aa)
VDAG_06567Pre-mRNA-splicing factor ini1. (110 aa)
VDAG_06583Pre-mRNA-splicing factor syf-2. (129 aa)
VDAG_06584Uncharacterized protein. (106 aa)
VDAG_06186Small nuclear ribonucleoprotein G. (85 aa)
VDAG_06633Peptidyl-prolyl cis-trans isomerase cyp8. (569 aa)
VDAG_06654Intron-binding protein aquarius. (1267 aa)
VDAG_07119Rhamnogalacturonate lyase. (668 aa)
VDAG_06956Uncharacterized protein. (211 aa)
VDAG_07025Peptidyl-prolyl isomerase CWC27. (546 aa)
VDAG_07434Tudor domain-containing protein. (509 aa)
VDAG_07491NACHT and Ankyrin domain-containing protein. (755 aa)
VDAG_07803Cell cycle control protein cwf19. (707 aa)
VDAG_07985Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22. (1190 aa)
VDAG_08418Cell cycle control protein cwf16. (247 aa)
VDAG_08454Splicing factor 3B subunit 4. (498 aa)
VDAG_08466Pre-mRNA-splicing factor CWC2. (411 aa)
VDAG_08533Pre-mRNA-processing protein. (536 aa)
VDAG_08679U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
VDAG_08683GTP-binding protein EsdC. (326 aa)
VDAG_08828Pre-mRNA-splicing factor clf1. (673 aa)
VDAG_08829Pre-mRNA-processing factor 31. (596 aa)
VDAG_08859Pre-mRNA-splicing factor prp46. (482 aa)
VDAG_08924Peptidyl-prolyl cis-trans isomerase E. (153 aa)
VDAG_09233MFAP1 domain-containing protein. (278 aa)
VDAG_09240Small nuclear ribonucleoprotein Sm D2. (122 aa)
VDAG_09309Splicing factor 3A subunit 3. (500 aa)
VDAG_09482Smad nuclear-interacting protein. (318 aa)
VDAG_09663Cell cycle control protein cwf8. (483 aa)
VDAG_10009Splicing factor 3B subunit 2. (534 aa)
VDAG_10034U4/U6 small nuclear ribonucleoprotein Prp3. (458 aa)
VDAG_10131Pre-mRNA-splicing factor CWC26. (332 aa)
VDAG_10214G-patch domain-containing protein. (862 aa)
VDAG_10253Pre-mRNA-splicing factor cef-1. (780 aa)
VDAG_10349SMB protein. (220 aa)
VDAG_10316Pre-mRNA-splicing factor sap114. (518 aa)
VDAG_10305Pre-mRNA-splicing factor spp42. (2874 aa)
VDAG_10422Pre-mRNA-splicing factor SYF1. (822 aa)
VDAG_10424U1 small nuclear ribonucleoprotein A. (246 aa)
VDAG_10443Rhamnogalacturonan lyase. (654 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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