42 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00164	Uncharacterized protein. (397 aa)
	VDAG_00165	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (973 aa)
	VDAG_00894	ATP-dependent RNA helicase DHX8. (675 aa)
	VDAG_01354	Uncharacterized protein. (128 aa)
	VDAG_01644	Pre-mRNA-splicing factor slt-11. (381 aa)
	VDAG_02758	RNA-binding motif protein. (333 aa)
	VDAG_02778	Pre-mRNA-splicing factor cwc25. (372 aa)
	VDAG_02435	Pre-mRNA-splicing factor cwc24. (336 aa)
	VDAG_02439	Pre-mRNA-splicing factor SLU7. (468 aa)
	VDAG_02645	Pre-mRNA-splicing factor ISY1. (245 aa)
	VDAG_03244	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (963 aa)
	VDAG_03726	Uncharacterized protein. (305 aa)
	VDAG_04565	Uncharacterized protein. (472 aa)
	VDAG_05627	DUF1716 domain-containing protein. (575 aa)
	VDAG_05306	C2H2-type domain-containing protein. (359 aa)
	VDAG_05729	Pre-mRNA-splicing factor CWC21. (175 aa)
	VDAG_05804	Pre-mRNA-splicing factor cwc15. (246 aa)
	VDAG_05862	Zn(2)-C6 fungal-type domain-containing protein. (512 aa)
	VDAG_05919	Pre-mRNA-splicing factor SPP2. (403 aa)
	VDAG_05945	Cell cycle control protein cwf14. (148 aa)
	VDAG_06534	Uncharacterized protein. (707 aa)
	VDAG_06536	Pre-mRNA-splicing factor cwc22. (951 aa)
	VDAG_06583	Pre-mRNA-splicing factor syf-2. (129 aa)
	VDAG_06584	Uncharacterized protein. (106 aa)
	VDAG_06654	Intron-binding protein aquarius. (1267 aa)
	VDAG_07119	Rhamnogalacturonate lyase. (668 aa)
	VDAG_07025	Peptidyl-prolyl isomerase CWC27. (546 aa)
	VDAG_07803	Cell cycle control protein cwf19. (707 aa)
	VDAG_07985	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22. (1190 aa)
	VDAG_08418	Cell cycle control protein cwf16. (247 aa)
	VDAG_08466	Pre-mRNA-splicing factor CWC2. (411 aa)
	VDAG_08533	Pre-mRNA-processing protein. (536 aa)
	VDAG_08828	Pre-mRNA-splicing factor clf1. (673 aa)
	VDAG_08859	Pre-mRNA-splicing factor prp46. (482 aa)
	VDAG_08924	Peptidyl-prolyl cis-trans isomerase E. (153 aa)
	VDAG_09482	Smad nuclear-interacting protein. (318 aa)
	VDAG_09663	Cell cycle control protein cwf8. (483 aa)
	VDAG_10131	Pre-mRNA-splicing factor CWC26. (332 aa)
	VDAG_10214	G-patch domain-containing protein. (862 aa)
	VDAG_10253	Pre-mRNA-splicing factor cef-1. (780 aa)
	VDAG_10422	Pre-mRNA-splicing factor SYF1. (822 aa)
	VDAG_10443	Rhamnogalacturonan lyase. (654 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00164	VDAG_01354	G2WRI1	G2WU81	Uncharacterized protein.	Uncharacterized protein.	0.604
VDAG_00164	VDAG_01644	G2WRI1	G2WVK8	Uncharacterized protein.	Pre-mRNA-splicing factor slt-11.	0.826
VDAG_00164	VDAG_02435	G2WRI1	G2WXV3	Uncharacterized protein.	Pre-mRNA-splicing factor cwc24.	0.933
VDAG_00164	VDAG_02439	G2WRI1	G2WXV7	Uncharacterized protein.	Pre-mRNA-splicing factor SLU7.	0.663
VDAG_00164	VDAG_02645	G2WRI1	G2WYG3	Uncharacterized protein.	Pre-mRNA-splicing factor ISY1.	0.610
VDAG_00164	VDAG_02758	G2WRI1	G2WWX9	Uncharacterized protein.	RNA-binding motif protein.	0.826
VDAG_00164	VDAG_02778	G2WRI1	G2WWZ9	Uncharacterized protein.	Pre-mRNA-splicing factor cwc25.	0.654
VDAG_00164	VDAG_03244	G2WRI1	G2WZ02	Uncharacterized protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.	0.857
VDAG_00164	VDAG_03726	G2WRI1	G2X0E7	Uncharacterized protein.	Uncharacterized protein.	0.507
VDAG_00164	VDAG_04565	G2WRI1	G2X3H8	Uncharacterized protein.	Uncharacterized protein.	0.648
VDAG_00164	VDAG_05729	G2WRI1	G2X6E7	Uncharacterized protein.	Pre-mRNA-splicing factor CWC21.	0.839
VDAG_00164	VDAG_05804	G2WRI1	G2X6M2	Uncharacterized protein.	Pre-mRNA-splicing factor cwc15.	0.805
VDAG_00164	VDAG_05862	G2WRI1	G2X6T0	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.572
VDAG_00164	VDAG_05919	G2WRI1	G2X6Y7	Uncharacterized protein.	Pre-mRNA-splicing factor SPP2.	0.890
VDAG_00164	VDAG_05945	G2WRI1	G2X713	Uncharacterized protein.	Cell cycle control protein cwf14.	0.819
VDAG_00164	VDAG_06534	G2WRI1	G2X7S6	Uncharacterized protein.	Uncharacterized protein.	0.801
VDAG_00164	VDAG_06536	G2WRI1	G2X7S8	Uncharacterized protein.	Pre-mRNA-splicing factor cwc22.	0.801
VDAG_00164	VDAG_06583	G2WRI1	G2X7X5	Uncharacterized protein.	Pre-mRNA-splicing factor syf-2.	0.640
VDAG_00164	VDAG_06584	G2WRI1	G2X7X6	Uncharacterized protein.	Uncharacterized protein.	0.640
VDAG_00164	VDAG_06654	G2WRI1	G2X922	Uncharacterized protein.	Intron-binding protein aquarius.	0.538