STRINGSTRING
VDAG_00538 VDAG_00538 VDAG_00012 VDAG_00012 VDAG_00222 VDAG_00222 VDAG_00371 VDAG_00371 VDAG_00399 VDAG_00399 VDAG_01609 VDAG_01609 VDAG_00969 VDAG_00969 VDAG_01954 VDAG_01954 VDAG_02005 VDAG_02005 VDAG_02007 VDAG_02007 VDAG_02023 VDAG_02023 VDAG_02556 VDAG_02556 VDAG_03182 VDAG_03182 VDAG_03509 VDAG_03509 VDAG_03032 VDAG_03032 VDAG_03069 VDAG_03069 VDAG_04264 VDAG_04264 VDAG_04354 VDAG_04354 VDAG_04431 VDAG_04431 VDAG_04461 VDAG_04461 VDAG_04191 VDAG_04191 VDAG_05067 VDAG_05067 VDAG_05616 VDAG_05616 VDAG_05715 VDAG_05715 VDAG_05893 VDAG_05893 VDAG_06427 VDAG_06427 VDAG_06567 VDAG_06567 VDAG_06186 VDAG_06186 VDAG_07434 VDAG_07434 VDAG_08454 VDAG_08454 VDAG_08679 VDAG_08679 VDAG_08683 VDAG_08683 VDAG_08829 VDAG_08829 VDAG_09240 VDAG_09240 VDAG_09309 VDAG_09309 VDAG_10009 VDAG_10009 VDAG_10034 VDAG_10034 VDAG_10349 VDAG_10349 VDAG_10316 VDAG_10316 VDAG_10305 VDAG_10305 VDAG_10424 VDAG_10424
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_00538U2 small nuclear ribonucleoprotein A. (264 aa)
VDAG_00012Pre-mRNA-splicing factor prp1. (718 aa)
VDAG_00222G-patch domain-containing protein. (507 aa)
VDAG_00371Thermotolerance protein. (1315 aa)
VDAG_00399Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
VDAG_01609CID domain-containing protein. (820 aa)
VDAG_00969U5 small nuclear ribonucleoprotein component. (983 aa)
VDAG_01954U4/U6.U5 tri-snRNP-associated protein snu66. (650 aa)
VDAG_02005Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (770 aa)
VDAG_02007LSM domain-containing protein. (79 aa)
VDAG_02023DUF866 domain-containing protein. (160 aa)
VDAG_02556Splicing factor subunit; Belongs to the SF3B5 family. (117 aa)
VDAG_03182U2 small nuclear ribonucleoprotein B. (194 aa)
VDAG_03509Splicing factor 3A subunit 2. (241 aa)
VDAG_03032Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
VDAG_03069Pre-mRNA branch site protein p14. (117 aa)
VDAG_04264U2 snRNP component prp10. (1223 aa)
VDAG_04354Pre-mRNA-processing ATP-dependent RNA helicase PRP5. (1182 aa)
VDAG_04431U4/U6 small nuclear ribonucleoprotein Prp4. (515 aa)
VDAG_04461Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family. (683 aa)
VDAG_04191Pre-mRNA-splicing factor brr2. (2213 aa)
VDAG_05067Uncharacterized protein. (304 aa)
VDAG_05616WD repeat-containing protein. (356 aa)
VDAG_05715Uncharacterized protein. (234 aa)
VDAG_05893U1 small nuclear ribonucleoprotein. (416 aa)
VDAG_06427Pre-mRNA-splicing factor RSE1. (1230 aa)
VDAG_06567Pre-mRNA-splicing factor ini1. (110 aa)
VDAG_06186Small nuclear ribonucleoprotein G. (85 aa)
VDAG_07434Tudor domain-containing protein. (509 aa)
VDAG_08454Splicing factor 3B subunit 4. (498 aa)
VDAG_08679U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
VDAG_08683GTP-binding protein EsdC. (326 aa)
VDAG_08829Pre-mRNA-processing factor 31. (596 aa)
VDAG_09240Small nuclear ribonucleoprotein Sm D2. (122 aa)
VDAG_09309Splicing factor 3A subunit 3. (500 aa)
VDAG_10009Splicing factor 3B subunit 2. (534 aa)
VDAG_10034U4/U6 small nuclear ribonucleoprotein Prp3. (458 aa)
VDAG_10349SMB protein. (220 aa)
VDAG_10316Pre-mRNA-splicing factor sap114. (518 aa)
VDAG_10305Pre-mRNA-splicing factor spp42. (2874 aa)
VDAG_10424U1 small nuclear ribonucleoprotein A. (246 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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