20 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00613	THO complex subunit 2. (2374 aa)
	VDAG_00074	Polyadenylate-binding protein. (205 aa)
	VDAG_01780	ATP-dependent RNA helicase SUB2. (513 aa)
	VDAG_03152	mRNA export factor mex67. (649 aa)
	VDAG_03173	Uncharacterized protein. (213 aa)
	VDAG_03063	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (589 aa)
	VDAG_03949	Uncharacterized protein. (107 aa)
	VDAG_04465	C2H2-type domain-containing protein. (891 aa)
	VDAG_04200	Splicing factor U2AF 23 kDa subunit. (210 aa)
	VDAG_04215	RNA binding domain-containing protein. (329 aa)
	VDAG_04655	SAP domain-containing protein. (279 aa)
	VDAG_04682	Uncharacterized protein. (378 aa)
	VDAG_05874	Nuclear cap-binding protein subunit 2. (186 aa)
	VDAG_06655	THO complex subunit 1. (858 aa)
	VDAG_06680	RRM domain-containing protein. (209 aa)
	VDAG_08432	Cap binding protein. (795 aa)
	VDAG_08700	Uncharacterized protein. (357 aa)
	VDAG_08833	THO complex subunit 3. (339 aa)
	VDAG_08864	RRM domain-containing protein. (256 aa)
	VDAG_10099	Pre-mRNA splicing factor. (322 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00074	VDAG_01780	G2WR91	G2WVZ4	Polyadenylate-binding protein.	ATP-dependent RNA helicase SUB2.	0.614
VDAG_00074	VDAG_03063	G2WR91	G2X040	Polyadenylate-binding protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.952
VDAG_00074	VDAG_03152	G2WR91	G2WYR0	Polyadenylate-binding protein.	mRNA export factor mex67.	0.536
VDAG_00074	VDAG_03173	G2WR91	G2WYT1	Polyadenylate-binding protein.	Uncharacterized protein.	0.489
VDAG_00074	VDAG_04200	G2WR91	G2X306	Polyadenylate-binding protein.	Splicing factor U2AF 23 kDa subunit.	0.768
VDAG_00074	VDAG_04215	G2WR91	G2X321	Polyadenylate-binding protein.	RNA binding domain-containing protein.	0.708
VDAG_00074	VDAG_05874	G2WR91	G2X6U2	Polyadenylate-binding protein.	Nuclear cap-binding protein subunit 2.	0.968
VDAG_00074	VDAG_06655	G2WR91	G2X923	Polyadenylate-binding protein.	THO complex subunit 1.	0.408
VDAG_00074	VDAG_06680	G2WR91	G2X948	Polyadenylate-binding protein.	RRM domain-containing protein.	0.582
VDAG_00074	VDAG_08432	G2WR91	G2XE50	Polyadenylate-binding protein.	Cap binding protein.	0.893
VDAG_00074	VDAG_08864	G2WR91	G2XG77	Polyadenylate-binding protein.	RRM domain-containing protein.	0.708
VDAG_00074	VDAG_10099	G2WR91	G2XIX6	Polyadenylate-binding protein.	Pre-mRNA splicing factor.	0.848
VDAG_00613	VDAG_01780	G2WQH1	G2WVZ4	THO complex subunit 2.	ATP-dependent RNA helicase SUB2.	0.997
VDAG_00613	VDAG_03063	G2WQH1	G2X040	THO complex subunit 2.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.691
VDAG_00613	VDAG_03152	G2WQH1	G2WYR0	THO complex subunit 2.	mRNA export factor mex67.	0.770
VDAG_00613	VDAG_03173	G2WQH1	G2WYT1	THO complex subunit 2.	Uncharacterized protein.	0.997
VDAG_00613	VDAG_03949	G2WQH1	G2X120	THO complex subunit 2.	Uncharacterized protein.	0.404
VDAG_00613	VDAG_04200	G2WQH1	G2X306	THO complex subunit 2.	Splicing factor U2AF 23 kDa subunit.	0.632
VDAG_00613	VDAG_04215	G2WQH1	G2X321	THO complex subunit 2.	RNA binding domain-containing protein.	0.994
VDAG_00613	VDAG_04655	G2WQH1	G2X3R8	THO complex subunit 2.	SAP domain-containing protein.	0.404