55 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00738	Lupus La protein. (415 aa)
	VDAG_00742	Nucleoporin Nup157/170. (1396 aa)
	VDAG_00125	Nuclear polyadenylated RNA-binding protein. (484 aa)
	VDAG_00139	Uncharacterized protein. (1060 aa)
	VDAG_00146	ATP-dependent RNA helicase DBP5. (485 aa)
	VDAG_00380	RanBD1 domain-containing protein. (491 aa)
	VDAG_00398	Karyopherin. (966 aa)
	VDAG_00412	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family. (544 aa)
	VDAG_00922	KapH. (1008 aa)
	VDAG_01219	Nucleoporin NIC96. (1177 aa)
	VDAG_01351	Nucleoporin GLE1. (548 aa)
	VDAG_02130	Uncharacterized protein. (824 aa)
	VDAG_02322	Importin subunit beta-3. (1096 aa)
	VDAG_01751	Uncharacterized protein. (997 aa)
	VDAG_01848	Poly(A)+ RNA export protein. (358 aa)
	VDAG_02729	Nucleoporin nup44. (358 aa)
	VDAG_03000	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (901 aa)
	VDAG_03006	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (218 aa)
	VDAG_03745	Regulator of chromosome condensation. (405 aa)
	VDAG_03593	Uncharacterized protein. (846 aa)
	VDAG_04257	Uncharacterized protein. (1563 aa)
	VDAG_04415	Uncharacterized protein. (691 aa)
	VDAG_04418	Ran GTPase-activating protein. (375 aa)
	VDAG_04456	Nuclear pore glycoprotein p62. (721 aa)
	VDAG_04486	Nuclear polyadenylated RNA-binding protein NAB2. (501 aa)
	VDAG_04662	Importin subunit beta-2. (942 aa)
	VDAG_04724	Uncharacterized protein. (729 aa)
	VDAG_04996	Importin subunit beta-1. (870 aa)
	VDAG_05382	Karyopherin Kap123. (1103 aa)
	VDAG_05438	TPR_MLP1_2 domain-containing protein. (2093 aa)
	VDAG_05737	Nup188_C domain-containing protein. (1795 aa)
	VDAG_05897	Uncharacterized protein. (1665 aa)
	VDAG_06261	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (182 aa)
	VDAG_06602	Xpo1 domain-containing protein. (779 aa)
	VDAG_07338	RCC1 domain-containing protein. (665 aa)
	VDAG_07353	Uncharacterized protein. (443 aa)
	VDAG_07456	Nucleoporin nup189. (1956 aa)
	VDAG_07885	KapG. (1040 aa)
	VDAG_08161	Uncharacterized protein. (457 aa)
	VDAG_08305	Nucleosome assembly protein; Belongs to the nucleosome assembly protein (NAP) family. (405 aa)
	VDAG_08325	Importin subunit alpha; Belongs to the importin alpha family. (551 aa)
	VDAG_08541	Uncharacterized protein. (1407 aa)
	VDAG_08795	Uncharacterized protein. (1200 aa)
	VDAG_08993	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (439 aa)
	VDAG_09248	Cellulose-growth-specific protein. (223 aa)
	VDAG_09457	MSN5 protein. (1272 aa)
	VDAG_09778	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1020 aa)
	VDAG_09691	Uncharacterized protein. (786 aa)
	VDAG_09692	Ran-specific GTPase-activating protein. (257 aa)
	VDAG_09949	CCCH zinc finger domain-containing protein. (599 aa)
	VDAG_09982	Importin alpha re-exporter. (958 aa)
	VDAG_10000	Exportin-1. (1078 aa)
	VDAG_10111	Transport protein SEC13; Belongs to the WD repeat SEC13 family. (288 aa)
	VDAG_10338	Importin-7. (1052 aa)
	VDAG_10488	ELYS domain-containing protein. (293 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00125	VDAG_04486	G2WRE2	G2X2G2	Nuclear polyadenylated RNA-binding protein.	Nuclear polyadenylated RNA-binding protein NAB2.	0.971
VDAG_00125	VDAG_04662	G2WRE2	G2X3S5	Nuclear polyadenylated RNA-binding protein.	Importin subunit beta-2.	0.846
VDAG_00125	VDAG_04724	G2WRE2	G2X3Y7	Nuclear polyadenylated RNA-binding protein.	Uncharacterized protein.	0.461
VDAG_00139	VDAG_00146	G2WRF6	G2WRG3	Uncharacterized protein.	ATP-dependent RNA helicase DBP5.	0.819
VDAG_00139	VDAG_00380	G2WRF6	G2WS47	Uncharacterized protein.	RanBD1 domain-containing protein.	0.999
VDAG_00139	VDAG_00398	G2WRF6	G2WS65	Uncharacterized protein.	Karyopherin.	0.505
VDAG_00139	VDAG_00412	G2WRF6	G2WS79	Uncharacterized protein.	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	0.999
VDAG_00139	VDAG_00742	G2WRF6	G2WQV0	Uncharacterized protein.	Nucleoporin Nup157/170.	0.999
VDAG_00139	VDAG_01219	G2WRF6	G2WTU6	Uncharacterized protein.	Nucleoporin NIC96.	0.999
VDAG_00139	VDAG_01351	G2WRF6	G2WU78	Uncharacterized protein.	Nucleoporin GLE1.	0.999
VDAG_00139	VDAG_01751	G2WRF6	G2WVW5	Uncharacterized protein.	Uncharacterized protein.	0.649
VDAG_00139	VDAG_01848	G2WRF6	G2WW62	Uncharacterized protein.	Poly(A)+ RNA export protein.	0.999
VDAG_00139	VDAG_02130	G2WRF6	G2WUY9	Uncharacterized protein.	Uncharacterized protein.	0.979
VDAG_00139	VDAG_02322	G2WRF6	G2WVI1	Uncharacterized protein.	Importin subunit beta-3.	0.900
VDAG_00139	VDAG_02729	G2WRF6	G2WWV0	Uncharacterized protein.	Nucleoporin nup44.	0.999
VDAG_00139	VDAG_03000	G2WRF6	G2WZX7	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
VDAG_00139	VDAG_03006	G2WRF6	G2WZY3	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.992
VDAG_00139	VDAG_03593	G2WRF6	G2X1I2	Uncharacterized protein.	Uncharacterized protein.	0.978
VDAG_00139	VDAG_04257	G2WRF6	G2X1T3	Uncharacterized protein.	Uncharacterized protein.	0.999
VDAG_00139	VDAG_04415	G2WRF6	G2X291	Uncharacterized protein.	Uncharacterized protein.	0.979