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VDAG_00690 VDAG_00690 VDAG_00696 VDAG_00696 VDAG_00141 VDAG_00141 VDAG_00385 VDAG_00385 VDAG_01571 VDAG_01571 VDAG_01612 VDAG_01612 VDAG_00839 VDAG_00839 VDAG_00940 VDAG_00940 VDAG_00994 VDAG_00994 VDAG_01058 VDAG_01058 VDAG_01065 VDAG_01065 VDAG_01211 VDAG_01211 VDAG_01224 VDAG_01224 VDAG_01908 VDAG_01908 VDAG_02888 VDAG_02888 VDAG_02595 VDAG_02595 VDAG_03186 VDAG_03186 VDAG_03273 VDAG_03273 VDAG_03280 VDAG_03280 VDAG_03404 VDAG_03404 VDAG_03521 VDAG_03521 VDAG_03552 VDAG_03552 VDAG_03014 VDAG_03014 VDAG_03020 VDAG_03020 VDAG_03035 VDAG_03035 VDAG_03750 VDAG_03750 VDAG_03923 VDAG_03923 VDAG_04053 VDAG_04053 VDAG_04242 VDAG_04242 VDAG_04383 VDAG_04383 VDAG_04392 VDAG_04392 VDAG_04409 VDAG_04409 VDAG_04140 VDAG_04140 VDAG_04574 VDAG_04574 VDAG_04649 VDAG_04649 VDAG_04667 VDAG_04667 VDAG_05018 VDAG_05018 VDAG_05625 VDAG_05625 VDAG_05947 VDAG_05947 VDAG_06451 VDAG_06451 VDAG_06508 VDAG_06508 VDAG_06260 VDAG_06260 VDAG_06076 VDAG_06076 VDAG_06087 VDAG_06087 VDAG_06114 VDAG_06114 VDAG_06676 VDAG_06676 VDAG_06687 VDAG_06687 VDAG_06842 VDAG_06842 VDAG_06875 VDAG_06875 VDAG_06975 VDAG_06975 VDAG_07004 VDAG_07004 VDAG_07068 VDAG_07068 VDAG_07095 VDAG_07095 VDAG_07377 VDAG_07377 VDAG_07504 VDAG_07504 VDAG_07792 VDAG_07792 VDAG_07801 VDAG_07801 VDAG_07802 VDAG_07802 VDAG_08162 VDAG_08162 VDAG_08363 VDAG_08363 VDAG_08414 VDAG_08414 VDAG_08425 VDAG_08425 VDAG_08575 VDAG_08575 VDAG_08811 VDAG_08811 VDAG_09161 VDAG_09161 VDAG_08966 VDAG_08966 VDAG_08877 VDAG_08877 VDAG_09315 VDAG_09315 VDAG_09544 VDAG_09544 VDAG_09548 VDAG_09548 VDAG_09769 VDAG_09769 VDAG_09904 VDAG_09904 VDAG_10019 VDAG_10019 VDAG_10031 VDAG_10031 VDAG_10033 VDAG_10033 VDAG_10130 VDAG_10130 VDAG_10182 VDAG_10182 VDAG_10430 VDAG_10430 VDAG_10435 VDAG_10435 VDAG_10448 VDAG_10448 VDAG_10455 VDAG_10455
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_00690DNA-directed RNA polymerases I. (231 aa)
VDAG_00696DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (122 aa)
VDAG_00141RNA polymerase II transcription factor B subunit 5. (71 aa)
VDAG_00385Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
VDAG_01571Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (277 aa)
VDAG_01612TATA-box-binding protein. (249 aa)
VDAG_00839Transcription initiation factor TFIID subunit 12. (751 aa)
VDAG_00940Transcription initiation factor TFIID subunit 1. (1158 aa)
VDAG_00994DNA-directed RNA polymerases I/II/III subunit 10. (76 aa)
VDAG_01058Transcription initiation factor TFIID 127kD subunit. (1533 aa)
VDAG_01065Uncharacterized protein. (404 aa)
VDAG_01211Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1062 aa)
VDAG_01224Uncharacterized protein. (356 aa)
VDAG_01908DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (110 aa)
VDAG_02888Uncharacterized protein. (169 aa)
VDAG_02595DNA-dependent RNA polymerase I subunit A43. (486 aa)
VDAG_03186Uncharacterized protein. (577 aa)
VDAG_03273GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family. (298 aa)
VDAG_03280DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide. (174 aa)
VDAG_03404Uncharacterized protein. (212 aa)
VDAG_03521Transcription initiation factor IIB. (352 aa)
VDAG_03552Uncharacterized protein. (272 aa)
VDAG_03014Transcription initiation factor iif. (368 aa)
VDAG_03020RNA polymerase I-specific transcription initiation factor rrn3. (693 aa)
VDAG_03035DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1231 aa)
VDAG_03750DNA repair helicase RAD25. (792 aa)
VDAG_03923General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (461 aa)
VDAG_04053RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (666 aa)
VDAG_04242DNA-directed RNA polymerases I and III subunit RPAC1. (375 aa)
VDAG_04383Transcription initiation factor TFIID subunit 7. (506 aa)
VDAG_04392DNA-directed RNA polymerase II subunit RPB7. (171 aa)
VDAG_04409Bromodomain associated domain-containing protein. (283 aa)
VDAG_04140HMG box domain-containing protein. (516 aa)
VDAG_04574Transcription initiation factor IIE subunit alpha. (411 aa)
VDAG_04649Transcription initiation factor TFIID subunit 5. (759 aa)
VDAG_04667Uncharacterized protein. (400 aa)
VDAG_05018TAFII28 domain-containing protein. (327 aa)
VDAG_05625DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
VDAG_05947DNA-directed RNA polymerases I and III subunit RPAC2. (146 aa)
VDAG_06451DNA-directed RNA polymerases I. (149 aa)
VDAG_06508Iwr1 domain-containing protein. (432 aa)
VDAG_06260DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (393 aa)
VDAG_06076Uncharacterized protein. (412 aa)
VDAG_06087Uncharacterized protein. (158 aa)
VDAG_06114DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1755 aa)
VDAG_06676DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1456 aa)
VDAG_06687Bromodomain associated domain-containing protein. (316 aa)
VDAG_06842RNA polymerase II transcription factor B subunit 3. (353 aa)
VDAG_06875Transcription initiation factor TFIID subunit 9. (312 aa)
VDAG_06975DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1160 aa)
VDAG_07004Uncharacterized protein. (167 aa)
VDAG_07068DNA-directed RNA polymerase II subunit RPB3. (342 aa)
VDAG_07095Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (224 aa)
VDAG_07377RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (476 aa)
VDAG_07504RNA polymerase II transcription factor B subunit 4. (398 aa)
VDAG_07792Transcription factor tfiiib complex subunit brf1. (735 aa)
VDAG_07801Metallothionein-I transcription activator. (81 aa)
VDAG_07802GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import. (383 aa)
VDAG_08162DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (283 aa)
VDAG_08363Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (112 aa)
VDAG_08414Uncharacterized protein. (325 aa)
VDAG_08425DNA-directed RNA polymerase II. (151 aa)
VDAG_08575Acyl_transf_3 domain-containing protein. (517 aa)
VDAG_08811RPOL4c domain-containing protein. (160 aa)
VDAG_09161HMG box domain-containing protein. (518 aa)
VDAG_08966SAP30_Sin3_bdg domain-containing protein. (180 aa)
VDAG_08877RPOL4c domain-containing protein. (149 aa)
VDAG_09315Transcription initiation factor TFIID subunit 6. (394 aa)
VDAG_09544RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (818 aa)
VDAG_09548Fanconi anemia group J protein. (838 aa)
VDAG_09769SANT domain-containing protein. (600 aa)
VDAG_09904Uncharacterized protein. (406 aa)
VDAG_10019RNA polymerase II transcription factor B subunit 1. (547 aa)
VDAG_10031DNA repair helicase RAD3. (772 aa)
VDAG_10033DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1702 aa)
VDAG_10130Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (722 aa)
VDAG_10182Uncharacterized protein. (275 aa)
VDAG_10430DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
VDAG_10435GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family. (363 aa)
VDAG_10448DUF408 domain-containing protein. (288 aa)
VDAG_10455Cyclin mcs2. (359 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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