7 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_04392	DNA-directed RNA polymerase II subunit RPB7. (171 aa)
	VDAG_05625	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
	VDAG_06114	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1755 aa)
	VDAG_07068	DNA-directed RNA polymerase II subunit RPB3. (342 aa)
	VDAG_07801	Metallothionein-I transcription activator. (81 aa)
	VDAG_08425	DNA-directed RNA polymerase II. (151 aa)
	VDAG_08811	RPOL4c domain-containing protein. (160 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_04392	VDAG_05625	G2X268	G2X5X0	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_04392	VDAG_06114	G2X268	G2X8H3	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_04392	VDAG_07068	G2X268	G2XAG5	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase II subunit RPB3.	0.999
VDAG_04392	VDAG_07801	G2X268	G2XCB9	DNA-directed RNA polymerase II subunit RPB7.	Metallothionein-I transcription activator.	0.999
VDAG_04392	VDAG_08425	G2X268	G2XE43	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase II.	0.999
VDAG_04392	VDAG_08811	G2X268	G2XF79	DNA-directed RNA polymerase II subunit RPB7.	RPOL4c domain-containing protein.	0.999
VDAG_05625	VDAG_04392	G2X5X0	G2X268	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB7.	0.999
VDAG_05625	VDAG_06114	G2X5X0	G2X8H3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_05625	VDAG_07068	G2X5X0	G2XAG5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.999
VDAG_05625	VDAG_07801	G2X5X0	G2XCB9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Metallothionein-I transcription activator.	0.999
VDAG_05625	VDAG_08425	G2X5X0	G2XE43	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II.	0.999
VDAG_05625	VDAG_08811	G2X5X0	G2XF79	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
VDAG_06114	VDAG_04392	G2X8H3	G2X268	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB7.	0.999
VDAG_06114	VDAG_05625	G2X8H3	G2X5X0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
VDAG_06114	VDAG_07068	G2X8H3	G2XAG5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.999
VDAG_06114	VDAG_07801	G2X8H3	G2XCB9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Metallothionein-I transcription activator.	0.999
VDAG_06114	VDAG_08425	G2X8H3	G2XE43	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II.	0.999
VDAG_06114	VDAG_08811	G2X8H3	G2XF79	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
VDAG_07068	VDAG_04392	G2XAG5	G2X268	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerase II subunit RPB7.	0.999
VDAG_07068	VDAG_05625	G2XAG5	G2X5X0	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999