(10 nodes) Chromosome, subtelomeric region, and SWIRM domain network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00885	Chromo domain-containing protein. (1363 aa)
	VDAG_00890	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (739 aa)
	VDAG_02380	Uncharacterized protein. (340 aa)
	VDAG_04477	Lysine-specific histone demethylase. (1074 aa)
	VDAG_05590	Heterochromatin protein one. (261 aa)
	VDAG_06804	Chromo domain-containing protein. (354 aa)
	VDAG_06891	C2H2-type domain-containing protein. (381 aa)
	VDAG_07842	Uncharacterized protein. (114 aa)
	VDAG_08665	Chromo domain-containing protein. (1735 aa)
	VDAG_09996	Uncharacterized protein. (369 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00885	VDAG_02380	G2WSW2	G2WXP8	Chromo domain-containing protein.	Uncharacterized protein.	0.506
VDAG_00885	VDAG_07842	G2WSW2	G2XCG0	Chromo domain-containing protein.	Uncharacterized protein.	0.506
VDAG_00885	VDAG_08665	G2WSW2	G2XET0	Chromo domain-containing protein.	Chromo domain-containing protein.	0.659
VDAG_00885	VDAG_09996	G2WSW2	G2XIL4	Chromo domain-containing protein.	Uncharacterized protein.	0.718
VDAG_00890	VDAG_05590	G2WSW7	G2X5T5	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Heterochromatin protein one.	0.593
VDAG_00890	VDAG_06891	G2WSW7	G2X9Y8	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	C2H2-type domain-containing protein.	0.659
VDAG_00890	VDAG_07842	G2WSW7	G2XCG0	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Uncharacterized protein.	0.420
VDAG_00890	VDAG_08665	G2WSW7	G2XET0	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Chromo domain-containing protein.	0.682
VDAG_02380	VDAG_00885	G2WXP8	G2WSW2	Uncharacterized protein.	Chromo domain-containing protein.	0.506
VDAG_02380	VDAG_05590	G2WXP8	G2X5T5	Uncharacterized protein.	Heterochromatin protein one.	0.506
VDAG_02380	VDAG_06804	G2WXP8	G2X9H2	Uncharacterized protein.	Chromo domain-containing protein.	0.506
VDAG_04477	VDAG_08665	G2X2F3	G2XET0	Lysine-specific histone demethylase.	Chromo domain-containing protein.	0.830
VDAG_04477	VDAG_09996	G2X2F3	G2XIL4	Lysine-specific histone demethylase.	Uncharacterized protein.	0.660
VDAG_05590	VDAG_00890	G2X5T5	G2WSW7	Heterochromatin protein one.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.593
VDAG_05590	VDAG_02380	G2X5T5	G2WXP8	Heterochromatin protein one.	Uncharacterized protein.	0.506
VDAG_05590	VDAG_06891	G2X5T5	G2X9Y8	Heterochromatin protein one.	C2H2-type domain-containing protein.	0.476
VDAG_05590	VDAG_07842	G2X5T5	G2XCG0	Heterochromatin protein one.	Uncharacterized protein.	0.577
VDAG_05590	VDAG_08665	G2X5T5	G2XET0	Heterochromatin protein one.	Chromo domain-containing protein.	0.780
VDAG_05590	VDAG_09996	G2X5T5	G2XIL4	Heterochromatin protein one.	Uncharacterized protein.	0.718
VDAG_06804	VDAG_02380	G2X9H2	G2WXP8	Chromo domain-containing protein.	Uncharacterized protein.	0.506