(12 nodes) Mixed, incl. RAC1 GTPase cycle, and PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_02067	Uncharacterized protein. (210 aa)
	VDAG_01854	Uncharacterized protein. (912 aa)
	VDAG_02545	Uncharacterized protein. (236 aa)
	VDAG_03036	ADP-ribosylation factor 3; Belongs to the small GTPase superfamily. Arf family. (183 aa)
	VDAG_03931	GTP-binding protein YPTC4. (279 aa)
	VDAG_04015	Uncharacterized protein. (419 aa)
	VDAG_04058	WW domain-containing protein. (388 aa)
	VDAG_04204	ELMO/CED-12 family protein. (767 aa)
	VDAG_06054	STB2 protein. (899 aa)
	VDAG_07122	Uncharacterized protein; Belongs to the DOCK family. (2055 aa)
	VDAG_07231	Uncharacterized protein. (867 aa)
	VDAG_08876	Uncharacterized protein. (166 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_01854	VDAG_02067	G2WW68	G2WUS6	Uncharacterized protein.	Uncharacterized protein.	0.596
VDAG_01854	VDAG_02545	G2WW68	G2WY63	Uncharacterized protein.	Uncharacterized protein.	0.679
VDAG_01854	VDAG_03036	G2WW68	G2X013	Uncharacterized protein.	ADP-ribosylation factor 3; Belongs to the small GTPase superfamily. Arf family.	0.778
VDAG_01854	VDAG_03931	G2WW68	G2X102	Uncharacterized protein.	GTP-binding protein YPTC4.	0.793
VDAG_01854	VDAG_04015	G2WW68	G2X186	Uncharacterized protein.	Uncharacterized protein.	0.632
VDAG_01854	VDAG_06054	G2WW68	G2X8B3	Uncharacterized protein.	STB2 protein.	0.778
VDAG_01854	VDAG_07122	G2WW68	G2X9S7	Uncharacterized protein.	Uncharacterized protein; Belongs to the DOCK family.	0.596
VDAG_01854	VDAG_07231	G2WW68	G2XB93	Uncharacterized protein.	Uncharacterized protein.	0.596
VDAG_01854	VDAG_08876	G2WW68	G2XG89	Uncharacterized protein.	Uncharacterized protein.	0.852
VDAG_02067	VDAG_01854	G2WUS6	G2WW68	Uncharacterized protein.	Uncharacterized protein.	0.596
VDAG_02067	VDAG_04058	G2WUS6	G2X1C9	Uncharacterized protein.	WW domain-containing protein.	0.596
VDAG_02067	VDAG_04204	G2WUS6	G2X310	Uncharacterized protein.	ELMO/CED-12 family protein.	0.843
VDAG_02067	VDAG_08876	G2WUS6	G2XG89	Uncharacterized protein.	Uncharacterized protein.	0.466
VDAG_02545	VDAG_01854	G2WY63	G2WW68	Uncharacterized protein.	Uncharacterized protein.	0.679
VDAG_02545	VDAG_03036	G2WY63	G2X013	Uncharacterized protein.	ADP-ribosylation factor 3; Belongs to the small GTPase superfamily. Arf family.	0.450
VDAG_02545	VDAG_03931	G2WY63	G2X102	Uncharacterized protein.	GTP-binding protein YPTC4.	0.450
VDAG_02545	VDAG_04058	G2WY63	G2X1C9	Uncharacterized protein.	WW domain-containing protein.	0.679
VDAG_02545	VDAG_06054	G2WY63	G2X8B3	Uncharacterized protein.	STB2 protein.	0.450
VDAG_02545	VDAG_08876	G2WY63	G2XG89	Uncharacterized protein.	Uncharacterized protein.	0.703
VDAG_03036	VDAG_01854	G2X013	G2WW68	ADP-ribosylation factor 3; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.778