(51 nodes) SNAP receptor activity, and Retrograde transport at the Trans-Golgi-Network network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00798	Calphotin. (3365 aa)
	VDAG_00278	SSOI protein. (332 aa)
	VDAG_00361	Vps52 / Sac2 family protein. (672 aa)
	VDAG_00867	Uncharacterized protein. (789 aa)
	VDAG_00869	RINT-1 family protein. (810 aa)
	VDAG_00881	Uncharacterized protein. (267 aa)
	VDAG_01236	V-SNARE. (287 aa)
	VDAG_01350	SNARE domain-containing protein. (271 aa)
	VDAG_02082	Beta-glucanase. (287 aa)
	VDAG_01963	Alpha-soluble NSF attachment protein. (292 aa)
	VDAG_01975	Vesicle transport v-SNARE protein vti1. (228 aa)
	VDAG_02581	SLY1 protein; Belongs to the STXBP/unc-18/SEC1 family. (666 aa)
	VDAG_02648	Synaptobrevin. (120 aa)
	VDAG_03042	Golgi reassembly-stacking protein. (348 aa)
	VDAG_04076	Intracellular protein transport protein USO1. (942 aa)
	VDAG_03579	t-SNARE coiled-coil homology domain-containing protein. (128 aa)
	VDAG_04327	Transport protein SEC9. (480 aa)
	VDAG_04359	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (225 aa)
	VDAG_04092	Cog4 domain-containing protein. (507 aa)
	VDAG_04124	Syntaxin. (402 aa)
	VDAG_04950	Integral membrane protein sed5. (319 aa)
	VDAG_04590	SNARE domain-containing protein; Belongs to the syntaxin family. (360 aa)
	VDAG_05024	COG2 domain-containing protein. (297 aa)
	VDAG_05190	Serine/threonine kinase. (260 aa)
	VDAG_05532	Uncharacterized protein. (70 aa)
	VDAG_05740	Synaptobrevin. (353 aa)
	VDAG_05790	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	VDAG_05802	ADP-ribosylation factor. (235 aa)
	VDAG_06050	SSO2 protein. (408 aa)
	VDAG_06787	V-SNARE. (178 aa)
	VDAG_06826	Uncharacterized protein. (798 aa)
	VDAG_06827	Thioredoxin reductase. (330 aa)
	VDAG_06949	Uncharacterized protein. (859 aa)
	VDAG_07086	Vesicular-fusion protein SEC18. (853 aa)
	VDAG_07498	SNARE domain-containing protein; Belongs to the syntaxin family. (264 aa)
	VDAG_07613	Uncharacterized protein. (450 aa)
	VDAG_08270	Transport protein BOS1. (275 aa)
	VDAG_08386	Transport protein sec22; Belongs to the synaptobrevin family. (217 aa)
	VDAG_08526	Vacuolar protein sorting-associated protein. (1066 aa)
	VDAG_08834	RIC1 domain-containing protein. (1100 aa)
	VDAG_08853	Uncharacterized protein. (448 aa)
	VDAG_08857	TMF_TATA_bd domain-containing protein. (788 aa)
	VDAG_08948	Synaptobrevin; Belongs to the synaptobrevin family. (197 aa)
	VDAG_09425	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events. (690 aa)
	VDAG_09504	Uncharacterized protein. (244 aa)
	VDAG_09933	Uncharacterized protein. (217 aa)
	VDAG_09959	Uncharacterized protein. (696 aa)
	VDAG_10115	ROP protein; Belongs to the STXBP/unc-18/SEC1 family. (613 aa)
	VDAG_10121	Vesicle-associated membrane protein; Belongs to the synaptobrevin family. (237 aa)
	VDAG_10156	GTP-binding protein ryh1. (196 aa)
	VDAG_10168	Syntaxin-18_N domain-containing protein. (304 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00278	VDAG_01236	G2WRU5	G2WTW3	SSOI protein.	V-SNARE.	0.807
VDAG_00278	VDAG_01350	G2WRU5	G2WU77	SSOI protein.	SNARE domain-containing protein.	0.766
VDAG_00278	VDAG_01963	G2WRU5	G2WWH7	SSOI protein.	Alpha-soluble NSF attachment protein.	0.931
VDAG_00278	VDAG_01975	G2WRU5	G2WWI9	SSOI protein.	Vesicle transport v-SNARE protein vti1.	0.656
VDAG_00278	VDAG_02082	G2WRU5	G2WUU1	SSOI protein.	Beta-glucanase.	0.411
VDAG_00278	VDAG_02581	G2WRU5	G2WY99	SSOI protein.	SLY1 protein; Belongs to the STXBP/unc-18/SEC1 family.	0.506
VDAG_00278	VDAG_02648	G2WRU5	G2WYG6	SSOI protein.	Synaptobrevin.	0.997
VDAG_00278	VDAG_03579	G2WRU5	G2X1G8	SSOI protein.	t-SNARE coiled-coil homology domain-containing protein.	0.440
VDAG_00278	VDAG_04124	G2WRU5	G2X2T0	SSOI protein.	Syntaxin.	0.472
VDAG_00278	VDAG_04327	G2WRU5	G2X203	SSOI protein.	Transport protein SEC9.	0.975
VDAG_00278	VDAG_04359	G2WRU5	G2X235	SSOI protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.666
VDAG_00278	VDAG_04590	G2WRU5	G2X3K3	SSOI protein.	SNARE domain-containing protein; Belongs to the syntaxin family.	0.810
VDAG_00278	VDAG_04950	G2WRU5	G2X3G5	SSOI protein.	Integral membrane protein sed5.	0.892
VDAG_00278	VDAG_05532	G2WRU5	G2X5M7	SSOI protein.	Uncharacterized protein.	0.656
VDAG_00278	VDAG_05740	G2WRU5	G2X6F8	SSOI protein.	Synaptobrevin.	0.540
VDAG_00278	VDAG_06050	G2WRU5	G2X8A9	SSOI protein.	SSO2 protein.	0.914
VDAG_00278	VDAG_06787	G2WRU5	G2X9F5	SSOI protein.	V-SNARE.	0.697
VDAG_00278	VDAG_07086	G2WRU5	G2XAI3	SSOI protein.	Vesicular-fusion protein SEC18.	0.880
VDAG_00278	VDAG_07498	G2WRU5	G2XBG6	SSOI protein.	SNARE domain-containing protein; Belongs to the syntaxin family.	0.802
VDAG_00278	VDAG_07613	G2WRU5	G2XC35	SSOI protein.	Uncharacterized protein.	0.451