(15 nodes) Retrograde transport at the Trans-Golgi-Network network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00361	Vps52 / Sac2 family protein. (672 aa)
	VDAG_00867	Uncharacterized protein. (789 aa)
	VDAG_00881	Uncharacterized protein. (267 aa)
	VDAG_04092	Cog4 domain-containing protein. (507 aa)
	VDAG_05024	COG2 domain-containing protein. (297 aa)
	VDAG_05790	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	VDAG_06826	Uncharacterized protein. (798 aa)
	VDAG_06827	Thioredoxin reductase. (330 aa)
	VDAG_06949	Uncharacterized protein. (859 aa)
	VDAG_08526	Vacuolar protein sorting-associated protein. (1066 aa)
	VDAG_08834	RIC1 domain-containing protein. (1100 aa)
	VDAG_08853	Uncharacterized protein. (448 aa)
	VDAG_08857	TMF_TATA_bd domain-containing protein. (788 aa)
	VDAG_09425	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events. (690 aa)
	VDAG_10156	GTP-binding protein ryh1. (196 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00361	VDAG_00867	G2WS28	G2WSU4	Vps52 / Sac2 family protein.	Uncharacterized protein.	0.848
VDAG_00361	VDAG_00881	G2WS28	G2WSV8	Vps52 / Sac2 family protein.	Uncharacterized protein.	0.983
VDAG_00361	VDAG_04092	G2WS28	G2X2P8	Vps52 / Sac2 family protein.	Cog4 domain-containing protein.	0.849
VDAG_00361	VDAG_05024	G2WS28	G2X4E2	Vps52 / Sac2 family protein.	COG2 domain-containing protein.	0.825
VDAG_00361	VDAG_05790	G2WS28	G2X6K8	Vps52 / Sac2 family protein.	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.	0.656
VDAG_00361	VDAG_06826	G2WS28	G2X9J4	Vps52 / Sac2 family protein.	Uncharacterized protein.	0.955
VDAG_00361	VDAG_06827	G2WS28	G2X9J5	Vps52 / Sac2 family protein.	Thioredoxin reductase.	0.955
VDAG_00361	VDAG_06949	G2WS28	G2XA46	Vps52 / Sac2 family protein.	Uncharacterized protein.	0.713
VDAG_00361	VDAG_08526	G2WS28	G2XEE1	Vps52 / Sac2 family protein.	Vacuolar protein sorting-associated protein.	0.997
VDAG_00361	VDAG_08834	G2WS28	G2XFA2	Vps52 / Sac2 family protein.	RIC1 domain-containing protein.	0.627
VDAG_00361	VDAG_08853	G2WS28	G2XFC1	Vps52 / Sac2 family protein.	Uncharacterized protein.	0.854
VDAG_00361	VDAG_08857	G2WS28	G2XFC5	Vps52 / Sac2 family protein.	TMF_TATA_bd domain-containing protein.	0.666
VDAG_00361	VDAG_09425	G2WS28	G2XGZ3	Vps52 / Sac2 family protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.850
VDAG_00361	VDAG_10156	G2WS28	G2XJ24	Vps52 / Sac2 family protein.	GTP-binding protein ryh1.	0.898
VDAG_00867	VDAG_00361	G2WSU4	G2WS28	Uncharacterized protein.	Vps52 / Sac2 family protein.	0.848
VDAG_00867	VDAG_00881	G2WSU4	G2WSV8	Uncharacterized protein.	Uncharacterized protein.	0.784
VDAG_00867	VDAG_04092	G2WSU4	G2X2P8	Uncharacterized protein.	Cog4 domain-containing protein.	0.998
VDAG_00867	VDAG_05024	G2WSU4	G2X4E2	Uncharacterized protein.	COG2 domain-containing protein.	0.997
VDAG_00867	VDAG_05790	G2WSU4	G2X6K8	Uncharacterized protein.	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.	0.701
VDAG_00867	VDAG_06826	G2WSU4	G2X9J4	Uncharacterized protein.	Uncharacterized protein.	0.774