(49 nodes) Organellar ribosome network (Verticillium dahliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00508	Uncharacterized protein. (186 aa)
	VDAG_00525	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (152 aa)
	VDAG_00733	54S ribosomal protein L3. (413 aa)
	VDAG_00181	Uncharacterized protein. (207 aa)
	VDAG_01592	Uncharacterized protein. (105 aa)
	VDAG_01625	Ribosomal_S7 domain-containing protein. (314 aa)
	VDAG_00899	54S ribosomal protein L9. (337 aa)
	VDAG_01114	Mitochondrial 37S ribosomal protein S8. (162 aa)
	VDAG_01151	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (110 aa)
	VDAG_01255	54S ribosomal protein L24. (281 aa)
	VDAG_01416	Mitochondrial 37S ribosomal protein SWS2; Belongs to the universal ribosomal protein uS13 family. (119 aa)
	VDAG_01458	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (442 aa)
	VDAG_01484	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (203 aa)
	VDAG_01488	37S ribosomal protein S24. (231 aa)
	VDAG_01729	Mitochondrial 40S ribosomal protein MRP2. (113 aa)
	VDAG_01788	Eukaryotic translation initiation factor 1A; Belongs to the eIF-1A family. (154 aa)
	VDAG_01944	50S ribosomal protein Mrp49. (199 aa)
	VDAG_01978	60S ribosomal protein L26-1. (136 aa)
	VDAG_02791	Mitochondrial ribosomal protein S16. (120 aa)
	VDAG_03460	Mitochondrial ribosomal protein S18. (248 aa)
	VDAG_03752	Uncharacterized protein. (241 aa)
	VDAG_04000	40S ribosomal protein mrp4. (396 aa)
	VDAG_04237	Uncharacterized protein. (496 aa)
	VDAG_04988	Uncharacterized protein. (930 aa)
	VDAG_05693	54S ribosomal protein L23. (179 aa)
	VDAG_05892	Mitochondrial 54S ribosomal protein L51. (137 aa)
	VDAG_06351	54S ribosomal protein L12. (201 aa)
	VDAG_06562	50S ribosomal subunit L30. (326 aa)
	VDAG_06600	30S ribosomal protein S10. (239 aa)
	VDAG_06695	Mitochondrial large ribosomal subunit protein; Belongs to the universal ribosomal protein uL22 family. (311 aa)
	VDAG_07170	Uncharacterized protein. (132 aa)
	VDAG_06894	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (494 aa)
	VDAG_06970	Ribosomal_L30 domain-containing protein; Belongs to the universal ribosomal protein uL30 family. (96 aa)
	VDAG_07090	Uncharacterized protein. (319 aa)
	VDAG_07875	Uncharacterized protein. (171 aa)
	VDAG_08355	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (336 aa)
	VDAG_08443	54S ribosomal protein L7. (356 aa)
	VDAG_08839	50S ribosomal protein L2. (392 aa)
	VDAG_08999	50S ribosomal protein L4. (271 aa)
	VDAG_09244	50S ribosomal protein L4. (320 aa)
	VDAG_09390	Nucleoside diphosphate kinase. (154 aa)
	VDAG_09423	Uncharacterized protein. (153 aa)
	VDAG_09722	Mitochondrial 54S ribosomal protein L38; Belongs to the universal ribosomal protein uL14 family. (128 aa)
	VDAG_09603	37S ribosomal protein Mrp17. (156 aa)
	VDAG_09676	54S ribosomal protein L10. (343 aa)
	VDAG_09907	37S ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (176 aa)
	VDAG_09954	Uncharacterized protein. (164 aa)
	VDAG_09961	Uncharacterized protein. (140 aa)
	VDAG_10073	54S ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family. (249 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00181	VDAG_00508	G2WRJ8	G2WQ66	Uncharacterized protein.	Uncharacterized protein.	0.996
VDAG_00181	VDAG_00525	G2WRJ8	G2WQ83	Uncharacterized protein.	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.977
VDAG_00181	VDAG_00733	G2WRJ8	G2WQU1	Uncharacterized protein.	54S ribosomal protein L3.	0.962
VDAG_00181	VDAG_00899	G2WRJ8	G2WSX6	Uncharacterized protein.	54S ribosomal protein L9.	0.994
VDAG_00181	VDAG_01114	G2WRJ8	G2WTJ1	Uncharacterized protein.	Mitochondrial 37S ribosomal protein S8.	0.916
VDAG_00181	VDAG_01151	G2WRJ8	G2WTM8	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.996
VDAG_00181	VDAG_01255	G2WRJ8	G2WTY2	Uncharacterized protein.	54S ribosomal protein L24.	0.960
VDAG_00181	VDAG_01416	G2WRJ8	G2WUE3	Uncharacterized protein.	Mitochondrial 37S ribosomal protein SWS2; Belongs to the universal ribosomal protein uS13 family.	0.916
VDAG_00181	VDAG_01458	G2WRJ8	G2WUI5	Uncharacterized protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.489
VDAG_00181	VDAG_01484	G2WRJ8	G2WUL1	Uncharacterized protein.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.992
VDAG_00181	VDAG_01488	G2WRJ8	G2WUL5	Uncharacterized protein.	37S ribosomal protein S24.	0.997
VDAG_00181	VDAG_01592	G2WRJ8	G2WSJ6	Uncharacterized protein.	Uncharacterized protein.	0.992
VDAG_00181	VDAG_01625	G2WRJ8	G2WSM9	Uncharacterized protein.	Ribosomal_S7 domain-containing protein.	0.976
VDAG_00181	VDAG_01729	G2WRJ8	G2WVU3	Uncharacterized protein.	Mitochondrial 40S ribosomal protein MRP2.	0.998
VDAG_00181	VDAG_01788	G2WRJ8	G2WW02	Uncharacterized protein.	Eukaryotic translation initiation factor 1A; Belongs to the eIF-1A family.	0.483
VDAG_00181	VDAG_01944	G2WRJ8	G2WWF8	Uncharacterized protein.	50S ribosomal protein Mrp49.	0.980
VDAG_00181	VDAG_01978	G2WRJ8	G2WWJ2	Uncharacterized protein.	60S ribosomal protein L26-1.	0.906
VDAG_00181	VDAG_02791	G2WRJ8	G2WX12	Uncharacterized protein.	Mitochondrial ribosomal protein S16.	0.998
VDAG_00181	VDAG_03460	G2WRJ8	G2WZL8	Uncharacterized protein.	Mitochondrial ribosomal protein S18.	0.998
VDAG_00181	VDAG_03752	G2WRJ8	G2X0H3	Uncharacterized protein.	Uncharacterized protein.	0.993