STRINGSTRING
VDAG_00286 VDAG_00286 VDAG_01116 VDAG_01116 VDAG_01275 VDAG_01275 VDAG_06110 VDAG_06110 VDAG_08540 VDAG_08540
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_00286Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family. (840 aa)
VDAG_01116Homoisocitrate dehydrogenase. (357 aa)
VDAG_01275Homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (490 aa)
VDAG_06110Homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (480 aa)
VDAG_08540Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis. (765 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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