22 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_01596	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (664 aa)
	VDAG_00935	Cysteine synthase. (225 aa)
	VDAG_01396	Aspartokinase. (519 aa)
	VDAG_01850	Homoserine kinase. (355 aa)
	VDAG_01999	Threonine synthase. (557 aa)
	VDAG_02929	Homocysteine S-methyltransferase. (355 aa)
	VDAG_02459	Aspartate-semialdehyde dehydrogenase. (361 aa)
	VDAG_03239	Methionine gamma-lyase. (449 aa)
	VDAG_03272	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. (395 aa)
	VDAG_03307	Cystathionine gamma-lyase. (420 aa)
	VDAG_03073	Cobalamin-independent synthase. (762 aa)
	VDAG_03667	Cysteine synthase B. (272 aa)
	VDAG_03754	Cysteine synthase. (341 aa)
	VDAG_03939	O-acetylhomoserine (Thiol)-lyase. (458 aa)
	VDAG_04090	Cystathionine gamma-synthase. (591 aa)
	VDAG_07814	Adenosylhomocysteinase. (449 aa)
	VDAG_08304	D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (469 aa)
	VDAG_08382	Phosphoserine aminotransferase. (433 aa)
	VDAG_09037	Cystathionine beta-lyase. (191 aa)
	VDAG_09297	O-acetylhomoserine (Thiol)-lyase. (378 aa)
	VDAG_09420	Cystathionine gamma-synthase. (591 aa)
	VDAG_10103	Homoserine dehydrogenase. (366 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00935	VDAG_01850	G2WT12	G2WW64	Cysteine synthase.	Homoserine kinase.	0.548
VDAG_00935	VDAG_02929	G2WT12	G2WXF0	Cysteine synthase.	Homocysteine S-methyltransferase.	0.863
VDAG_00935	VDAG_03073	G2WT12	G2X050	Cysteine synthase.	Cobalamin-independent synthase.	0.862
VDAG_00935	VDAG_03239	G2WT12	G2WYZ7	Cysteine synthase.	Methionine gamma-lyase.	0.601
VDAG_00935	VDAG_03272	G2WT12	G2WZ30	Cysteine synthase.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.457
VDAG_00935	VDAG_03307	G2WT12	G2WZ65	Cysteine synthase.	Cystathionine gamma-lyase.	0.958
VDAG_00935	VDAG_03667	G2WT12	G2X088	Cysteine synthase.	Cysteine synthase B.	0.838
VDAG_00935	VDAG_03754	G2WT12	G2X0H5	Cysteine synthase.	Cysteine synthase.	0.911
VDAG_00935	VDAG_03939	G2WT12	G2X110	Cysteine synthase.	O-acetylhomoserine (Thiol)-lyase.	0.970
VDAG_00935	VDAG_04090	G2WT12	G2X2P6	Cysteine synthase.	Cystathionine gamma-synthase.	0.958
VDAG_00935	VDAG_07814	G2WT12	G2XCD2	Cysteine synthase.	Adenosylhomocysteinase.	0.919
VDAG_00935	VDAG_08382	G2WT12	G2XE00	Cysteine synthase.	Phosphoserine aminotransferase.	0.924
VDAG_00935	VDAG_09037	G2WT12	G2XG58	Cysteine synthase.	Cystathionine beta-lyase.	0.601
VDAG_00935	VDAG_09297	G2WT12	G2XGL5	Cysteine synthase.	O-acetylhomoserine (Thiol)-lyase.	0.970
VDAG_00935	VDAG_09420	G2WT12	G2XGY8	Cysteine synthase.	Cystathionine gamma-synthase.	0.958
VDAG_01396	VDAG_01596	G2WUC3	G2WSK0	Aspartokinase.	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.447
VDAG_01396	VDAG_01850	G2WUC3	G2WW64	Aspartokinase.	Homoserine kinase.	0.962
VDAG_01396	VDAG_01999	G2WUC3	G2WWL3	Aspartokinase.	Threonine synthase.	0.950
VDAG_01396	VDAG_02459	G2WUC3	G2WXX7	Aspartokinase.	Aspartate-semialdehyde dehydrogenase.	0.998
VDAG_01396	VDAG_02929	G2WUC3	G2WXF0	Aspartokinase.	Homocysteine S-methyltransferase.	0.689