STRINGSTRING
VDAG_08765 VDAG_08765 VDAG_01971 VDAG_01971 VDAG_03123 VDAG_03123 VDAG_03032 VDAG_03032 VDAG_03063 VDAG_03063 VDAG_04652 VDAG_04652 VDAG_05874 VDAG_05874 VDAG_05893 VDAG_05893 VDAG_08679 VDAG_08679
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VDAG_08765Uncharacterized protein. (148 aa)
VDAG_01971Branchpoint-bridging protein. (327 aa)
VDAG_03123Pre-mRNA-processing factor 39. (576 aa)
VDAG_03032Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
VDAG_03063U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (589 aa)
VDAG_04652Branchpoint-bridging protein. (590 aa)
VDAG_05874Nuclear cap-binding protein subunit 2. (186 aa)
VDAG_05893U1 small nuclear ribonucleoprotein. (416 aa)
VDAG_08679U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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