18 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

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protein homology

Your Input:
	VDAG_08683	GTP-binding protein EsdC. (326 aa)
	VDAG_08679	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (179 aa)
	VDAG_08466	Pre-mRNA-splicing factor CWC2. (411 aa)
	VDAG_07434	Tudor domain-containing protein. (509 aa)
	VDAG_06980	SMN domain-containing protein. (173 aa)
	VDAG_06693	Uncharacterized protein. (1082 aa)
	VDAG_06186	Small nuclear ribonucleoprotein G. (85 aa)
	VDAG_06135	Uncharacterized protein. (408 aa)
	VDAG_01678	Serine-threonine kinase receptor-associated protein. (357 aa)
	VDAG_02007	LSM domain-containing protein. (79 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (130 aa)
	VDAG_00012	Pre-mRNA-splicing factor prp1. (718 aa)
	VDAG_00399	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	VDAG_00969	U5 small nuclear ribonucleoprotein component. (983 aa)
	VDAG_02023	DUF866 domain-containing protein. (160 aa)
	VDAG_10305	Pre-mRNA-splicing factor spp42. (2874 aa)
	VDAG_09240	Small nuclear ribonucleoprotein Sm D2. (122 aa)
	VDAG_08829	Pre-mRNA-processing factor 31. (596 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	VDAG_00012	G2WQI7	G2WR29	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor prp1.	0.961
LSM4	VDAG_00399	G2WQI7	G2WS66	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.978
LSM4	VDAG_00969	G2WQI7	G2WT46	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U5 small nuclear ribonucleoprotein component.	0.921
LSM4	VDAG_02007	G2WQI7	G2WWM1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM domain-containing protein.	0.968
LSM4	VDAG_02023	G2WQI7	G2WWN7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	DUF866 domain-containing protein.	0.855
LSM4	VDAG_06186	G2WQI7	G2X8P5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.967
LSM4	VDAG_06693	G2WQI7	G2X961	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.993
LSM4	VDAG_08679	G2WQI7	G2XEU4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.832
LSM4	VDAG_08683	G2WQI7	G2XEU8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	GTP-binding protein EsdC.	0.855
LSM4	VDAG_08829	G2WQI7	G2XF97	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing factor 31.	0.979
LSM4	VDAG_09240	G2WQI7	G2XGF8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.993
LSM4	VDAG_10305	G2WQI7	G2XJP2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-splicing factor spp42.	0.929
VDAG_00012	LSM4	G2WR29	G2WQI7	Pre-mRNA-splicing factor prp1.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.961
VDAG_00012	VDAG_00399	G2WR29	G2WS66	Pre-mRNA-splicing factor prp1.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.997
VDAG_00012	VDAG_00969	G2WR29	G2WT46	Pre-mRNA-splicing factor prp1.	U5 small nuclear ribonucleoprotein component.	0.999
VDAG_00012	VDAG_02007	G2WR29	G2WWM1	Pre-mRNA-splicing factor prp1.	LSM domain-containing protein.	0.996
VDAG_00012	VDAG_02023	G2WR29	G2WWN7	Pre-mRNA-splicing factor prp1.	DUF866 domain-containing protein.	0.865
VDAG_00012	VDAG_06186	G2WR29	G2X8P5	Pre-mRNA-splicing factor prp1.	Small nuclear ribonucleoprotein G.	0.996
VDAG_00012	VDAG_06693	G2WR29	G2X961	Pre-mRNA-splicing factor prp1.	Uncharacterized protein.	0.590
VDAG_00012	VDAG_07434	G2WR29	G2XAV3	Pre-mRNA-splicing factor prp1.	Tudor domain-containing protein.	0.952