77 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_00312	Uncharacterized protein. (936 aa)
	VDAG_10434	Uncharacterized protein. (205 aa)
	VDAG_10416	Uncharacterized protein. (725 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (631 aa)
	VDAG_10320	Sm domain-containing protein. (140 aa)
	VDAG_10129	Caffeine-induced death protein. (1075 aa)
	VDAG_09905	PAT1 domain-containing protein. (846 aa)
	VDAG_09658	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (398 aa)
	VDAG_09437	RNP domain-containing protein. (458 aa)
	VDAG_08884	Ribonuclease. (426 aa)
	VDAG_08882	Meiotic coiled-coil protein. (763 aa)
	VDAG_09053	Uncharacterized protein. (239 aa)
	VDAG_09052	Uncharacterized protein. (187 aa)
	VDAG_08811	RPOL4c domain-containing protein. (160 aa)
	VDAG_08798	YTH domain-containing protein. (448 aa)
	VDAG_08699	CCCH zinc finger protein. (449 aa)
	VDAG_08638	Uncharacterized protein. (529 aa)
	VDAG_08556	Uncharacterized protein. (544 aa)
	VDAG_08545	Exosome complex exonuclease RRP4. (354 aa)
	VDAG_08432	Cap binding protein. (795 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (80 aa)
	VDAG_08015	DCS2 protein. (294 aa)
	VDAG_07628	RNA-binding post-transcriptional regulator cip2. (601 aa)
	VDAG_07486	Meiotic recombination protein rec14. (336 aa)
	VDAG_07472	Uncharacterized protein. (2176 aa)
	VDAG_07445	Eukaryotic peptide chain release factor GTP-binding subunit. (706 aa)
	VDAG_07372	Endonuclease/exonuclease/phosphatase family protein. (324 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1077 aa)
	VDAG_07102	Uncharacterized protein. (1616 aa)
	VDAG_06800	Uncharacterized protein. (177 aa)
	VDAG_06639	mRNA-decapping enzyme. (816 aa)
	VDAG_06637	Uncharacterized protein. (286 aa)
	VDAG_06621	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (604 aa)
	VDAG_06596	RRM domain-containing protein. (650 aa)
	VDAG_06223	Exosome complex exonuclease RRP41. (275 aa)
	VDAG_06565	Uncharacterized protein. (364 aa)
	VDAG_06483	Uncharacterized protein. (236 aa)
	VDAG_06391	CCR4-NOT transcription complex subunit 7. (503 aa)
	VDAG_06312	Uncharacterized protein. (312 aa)
	VDAG_05909	Pumilio domain-containing protein. (825 aa)
	VDAG_05895	Cullin-4A; Belongs to the cullin family. (794 aa)
	VDAG_05874	Nuclear cap-binding protein subunit 2. (186 aa)
	VDAG_05840	Pumilio domain-containing protein. (1160 aa)
	VDAG_05803	Exosome complex exonuclease RRP45. (305 aa)
	VDAG_05699	Uncharacterized protein. (41 aa)
	VDAG_05689	ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family. (581 aa)
	VDAG_05517	Elongation factor 1-alpha. (798 aa)
	VDAG_05474	General negative regulator of transcription subunit 4. (1611 aa)
	VDAG_05447	Smr domain-containing protein. (531 aa)
	VDAG_04746	Uncharacterized protein. (283 aa)
	VDAG_04694	Glucose-repressible alcohol dehydrogenase transcriptional effector. (703 aa)
	VDAG_04564	Uncharacterized protein. (287 aa)
	VDAG_04930	NTP_transf_9 domain-containing protein. (165 aa)
	VDAG_04852	Uncharacterized protein. (580 aa)
	VDAG_04392	DNA-directed RNA polymerase II subunit RPB7. (171 aa)
	VDAG_03009	RNase_PH domain-containing protein. (249 aa)
	VDAG_03457	Uncharacterized protein. (274 aa)
	VDAG_03145	Mago-bind domain-containing protein. (211 aa)
	VDAG_02662	Exosome complex exonuclease RRP43. (336 aa)
	VDAG_02477	Exosome-associated family protein. (181 aa)
	VDAG_02740	Uncharacterized protein. (185 aa)
	VDAG_01899	C3H1-type domain-containing protein. (960 aa)
	VDAG_01741	EST1_DNA_bind domain-containing protein. (777 aa)
	VDAG_01641	Antiviral helicase SKI2. (1283 aa)
	VDAG_01384	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1404 aa)
	VDAG_01365	Sec2p domain-containing protein. (324 aa)
	VDAG_01364	3'-5' exoribonuclease CSL4. (306 aa)
	VDAG_01099	Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family. (255 aa)
	VDAG_00912	Exosome complex exonuclease RRP42. (367 aa)
	VDAG_00878	Uncharacterized protein. (1415 aa)
	VDAG_00844	HRDC domain-containing protein. (804 aa)
	VDAG_00819	Uncharacterized protein. (834 aa)
	VDAG_00377	Nonsense-mediated mRNA decay protein. (1070 aa)
	VDAG_00315	Exosome complex exonuclease RRP40. (245 aa)
	VDAG_00276	ATP-dependent helicase NAM7. (1099 aa)
	VDAG_00097	CCR4-NOT transcription complex subunit 3. (650 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (130 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	LSM5	G2WQI7	G2XE44	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM4	VDAG_01384	G2WQI7	G2WUB1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.828
LSM4	VDAG_03457	G2WQI7	G2WZL5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.655
LSM4	VDAG_04746	G2WQI7	G2X409	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.888
LSM4	VDAG_04930	G2WQI7	G2X3E5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	NTP_transf_9 domain-containing protein.	0.655
LSM4	VDAG_05874	G2WQI7	G2X6U2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nuclear cap-binding protein subunit 2.	0.821
LSM4	VDAG_06637	G2WQI7	G2X905	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.746
LSM4	VDAG_06639	G2WQI7	G2X907	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA-decapping enzyme.	0.746
LSM4	VDAG_06800	G2WQI7	G2X9G8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.999
LSM4	VDAG_08432	G2WQI7	G2XE50	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Cap binding protein.	0.706
LSM4	VDAG_09905	G2WQI7	G2XIC3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PAT1 domain-containing protein.	0.999
LSM4	VDAG_10320	G2WQI7	G2XJI8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM4	VDAG_10416	G2WQI7	G2XJT4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.878
LSM5	LSM4	G2XE44	G2WQI7	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	VDAG_01384	G2XE44	G2WUB1	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.794
LSM5	VDAG_03457	G2XE44	G2WZL5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.552
LSM5	VDAG_04746	G2XE44	G2X409	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.800
LSM5	VDAG_04930	G2XE44	G2X3E5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	NTP_transf_9 domain-containing protein.	0.552
LSM5	VDAG_05874	G2XE44	G2X6U2	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Nuclear cap-binding protein subunit 2.	0.713
LSM5	VDAG_06637	G2XE44	G2X905	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Uncharacterized protein.	0.552