35 items (Verticillium dahliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VDAG_10488	ELYS domain-containing protein. (293 aa)
	VDAG_00742	Nucleoporin Nup157/170. (1396 aa)
	VDAG_00146	ATP-dependent RNA helicase DBP5. (485 aa)
	VDAG_00205	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (1112 aa)
	VDAG_00380	RanBD1 domain-containing protein. (491 aa)
	VDAG_00412	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family. (544 aa)
	VDAG_01000	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (100 aa)
	VDAG_01219	Nucleoporin NIC96. (1177 aa)
	VDAG_01351	Nucleoporin GLE1. (548 aa)
	VDAG_01751	Uncharacterized protein. (997 aa)
	VDAG_01848	Poly(A)+ RNA export protein. (358 aa)
	VDAG_02729	Nucleoporin nup44. (358 aa)
	VDAG_02678	Uncharacterized protein. (455 aa)
	VDAG_03152	mRNA export factor mex67. (649 aa)
	VDAG_03000	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (901 aa)
	VDAG_04009	Uncharacterized protein. (729 aa)
	VDAG_04257	Uncharacterized protein. (1563 aa)
	VDAG_04456	Nuclear pore glycoprotein p62. (721 aa)
	VDAG_05737	Nup188_C domain-containing protein. (1795 aa)
	VDAG_05875	Uncharacterized protein. (888 aa)
	VDAG_05897	Uncharacterized protein. (1665 aa)
	VDAG_07456	Nucleoporin nup189. (1956 aa)
	VDAG_07468	Nuclear transport factor 2. (125 aa)
	VDAG_07497	Nuclear envelope protein. (638 aa)
	VDAG_07953	Uncharacterized protein. (286 aa)
	VDAG_08161	Uncharacterized protein. (457 aa)
	VDAG_08510	Uncharacterized protein. (346 aa)
	VDAG_08512	Uncharacterized protein. (887 aa)
	VDAG_08541	Uncharacterized protein. (1407 aa)
	VDAG_08795	Uncharacterized protein. (1200 aa)
	VDAG_09471	Nucleoporin Pom152. (1270 aa)
	VDAG_09691	Uncharacterized protein. (786 aa)
	VDAG_09692	Ran-specific GTPase-activating protein. (257 aa)
	VDAG_09949	CCCH zinc finger domain-containing protein. (599 aa)
	VDAG_10111	Transport protein SEC13; Belongs to the WD repeat SEC13 family. (288 aa)

Your Current Organism:

Verticillium dahliae

NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VDAG_00146	VDAG_01351	G2WRG3	G2WU78	ATP-dependent RNA helicase DBP5.	Nucleoporin GLE1.	0.975
VDAG_00146	VDAG_01848	G2WRG3	G2WW62	ATP-dependent RNA helicase DBP5.	Poly(A)+ RNA export protein.	0.613
VDAG_00146	VDAG_03152	G2WRG3	G2WYR0	ATP-dependent RNA helicase DBP5.	mRNA export factor mex67.	0.768
VDAG_00146	VDAG_04257	G2WRG3	G2X1T3	ATP-dependent RNA helicase DBP5.	Uncharacterized protein.	0.993
VDAG_00146	VDAG_04456	G2WRG3	G2X2D2	ATP-dependent RNA helicase DBP5.	Nuclear pore glycoprotein p62.	0.819
VDAG_00146	VDAG_07456	G2WRG3	G2XB26	ATP-dependent RNA helicase DBP5.	Nucleoporin nup189.	0.421
VDAG_00205	VDAG_03000	G2WRM2	G2WZX7	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.414
VDAG_00205	VDAG_05875	G2WRM2	G2X6U3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.426
VDAG_00205	VDAG_07456	G2WRM2	G2XB26	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin nup189.	0.825
VDAG_00205	VDAG_08795	G2WRM2	G2XF63	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.854
VDAG_00205	VDAG_10111	G2WRM2	G2XIR3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Transport protein SEC13; Belongs to the WD repeat SEC13 family.	0.420
VDAG_00380	VDAG_00412	G2WS47	G2WS79	RanBD1 domain-containing protein.	Nuclear pore complex subunit; Belongs to the WD repeat SEC13 family.	0.800
VDAG_00380	VDAG_00742	G2WS47	G2WQV0	RanBD1 domain-containing protein.	Nucleoporin Nup157/170.	0.862
VDAG_00380	VDAG_01219	G2WS47	G2WTU6	RanBD1 domain-containing protein.	Nucleoporin NIC96.	0.879
VDAG_00380	VDAG_01351	G2WS47	G2WU78	RanBD1 domain-containing protein.	Nucleoporin GLE1.	0.533
VDAG_00380	VDAG_01751	G2WS47	G2WVW5	RanBD1 domain-containing protein.	Uncharacterized protein.	0.560
VDAG_00380	VDAG_01848	G2WS47	G2WW62	RanBD1 domain-containing protein.	Poly(A)+ RNA export protein.	0.726
VDAG_00380	VDAG_02729	G2WS47	G2WWV0	RanBD1 domain-containing protein.	Nucleoporin nup44.	0.825
VDAG_00380	VDAG_03000	G2WS47	G2WZX7	RanBD1 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.820
VDAG_00380	VDAG_03152	G2WS47	G2WYR0	RanBD1 domain-containing protein.	mRNA export factor mex67.	0.714